FC923663

Overview
NameFC923663
Unique NameFC923663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10284 contig Ccv1_Contig10284:54..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.434e-36
Identity = 74/148 (50.00%), Postives = 106/148 (71.62%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 446
            ++T KW+GE +K   AVFSLA KI P ++F+DE+DS L  R +  +HEA   MK +FM  WDGL T +  +V+V+ ATNRP D+D A++RR+P    V LP+A  RE+I+R+IL+ E L++ ++L+ IA+ ++GYSGSDLK LC  AA
Sbjct:  164 TLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDSFLRNRSSM-DHEATAMMKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILRRMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAA 310          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.485e-36
Identity = 86/222 (38.74%), Postives = 134/222 (60.36%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGEG 665
            S+TSKW GEGEK V+A+F++A    P+V+F+DE+DS+L +R + GEHE+ R++K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   SD + + +   +DG+SG+D+  LC  A+  P                  + A     S   VRP+   DF+ A + V  +VS +   + E   WNE +G G
Sbjct:  478 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGP--------------IRSLHAADIATISPDQVRPIAYIDFENAFKTVRPTVSPKDLELYE--NWNETFGCG 682          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.991e-36
Identity = 86/222 (38.74%), Postives = 133/222 (59.91%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGEG 665
            S+TSKW GEGEK V+A+F++A    P+V+F+DE+DS+L +R + GEHE+ R++K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   +D + E +   +DG+SG+D+  LC  A+  P                  + A     S   VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  472 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGP--------------IRSLHTADIATISPDQVRPIAYIDFENAFRTVRPSVSPKDLELYE--NWNKTFGCG 676          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35
Identity = 86/222 (38.74%), Postives = 132/222 (59.46%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGEG 665
            S+TSKW GEGEK V+A+F++A    P+V+F+DE+DS+L +R   GEHE+ R++K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE  + ++ ++E I   ADG+SG+D+  LC  AA  P                          ++  VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  450 SLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQR-GEGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQLMDI--------------STITAEQVRPIAYIDFQSAFLVVRPSVSQKDLELYE--NWNKTFGCG 654          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.907e-35
Identity = 87/222 (39.19%), Postives = 130/222 (58.56%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGEG 665
            S+TSKW GEGEK V+A+F++A    P+V+F+DE+DS+L +R   GEHE+ R++K EF+V  DG  T   +R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  ++AKE  + ++ ++E I   ADG+SG+D+  LC  AA  P                          +   VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  451 SLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQR-GEGEHESSRRIKTEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQLMDI--------------STITPEQVRPIAYIDFQSAFLVVRPSVSQKDLELYE--NWNKTFGCG 655          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.797e-35
Identity = 85/222 (38.29%), Postives = 132/222 (59.46%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGEG 665
            S+TSKW GEGEK V+A+F++A    P+V+F+DE+DS+L +R + GEHE+ R++K EF+V  DG  T  ++R+LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   S+ ++E I   +D +SG+D+  LC  A+  P                    A     +   VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  469 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGP--------------IRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYE--NWNKTFGCG 673          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.958e-35
Identity = 82/221 (37.10%), Postives = 136/221 (61.54%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-EELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLXWNELYGE 662
            ++TSK+ GEGEK V+A+F++A ++ PS++F+DE+DS+L  R   GEH+A R++K EF++ +DG+++   ERVLV+ ATNRP +LDEAV+RR  +R+ V LP    R K+++ +L+K     S  +L  +A + DGYSGSDL +L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +++ + WN  YG+
Sbjct:  363 TLTSKYVGEGEKLVRALFAVARELQPSIIFIDEIDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRELKPEQVRN--------------MSAHEMRDIRISDFLESLKRIKRSVSPQT--LDQYVRWNREYGD 566          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.958e-35
Identity = 81/208 (38.94%), Postives = 116/208 (55.77%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNM 626
            ++T KW+GE +K   AVFSLA K+ PS++F+DE+DS L R  +  +HEA   MK +FM  WDGL T    +V+V+ ATNRP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA                     N  S   +   ++RP++  D   A E++  S  +   N+
Sbjct:  161 TLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFL-RNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA-------------LLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSKDAAFQNV 354          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.958e-35
Identity = 81/208 (38.94%), Postives = 116/208 (55.77%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNM 626
            ++T KW+GE +K   AVFSLA K+ PS++F+DE+DS L R  +  +HEA   MK +FM  WDGL T    +V+V+ ATNRP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA                     N  S   +   ++RP++  D   A E++  S  +   N+
Sbjct:  161 TLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFL-RNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA-------------LLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSKDAAFQNV 354          
BLAST of FC923663 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.458e-35
Identity = 79/197 (40.10%), Postives = 112/197 (56.85%), Query Frame = 3
Query:    3 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQV 593
            ++T KW+GE +K   AVFSLA K+ PS++F+DE+DS L R  +  +HEA   MK +FM  WDGL T    +V+V+ ATNRP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA                     N  S   +   ++RP++  D   A E++
Sbjct:  161 TLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFL-RNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA-------------LLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKM 343          
The following BLAST results are available for this feature:
BLAST of FC923663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
ATD1A_DANRE3.434e-3650.00ATPase family AAA domain-containing protein 1-A OS... [more]
FIGL1_MOUSE4.485e-3638.74Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
FIGL1_RAT9.991e-3638.74Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
FIGL1_XENLA2.226e-3538.74Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]
FIGL1_XENTR2.907e-3539.19Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
FIGL1_HUMAN3.797e-3538.29Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]
SPAST_DANRE4.958e-3537.10Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
ATAD1_MOUSE4.958e-3538.94ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN4.958e-3538.94ATPase family AAA domain-containing protein 1 OS=H... [more]
ATAD1_RAT8.458e-3540.10ATPase family AAA domain-containing protein 1 OS=R... [more]

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Properties
Property NameValue
Genbank descriptionC31707F04EF StrClemenN Citrus clementina cDNA clone C31707F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923663 ID=FC923663; Name=FC923663; organism=Citrus clementina; type=EST; length=705bp
CAAGCATTACTTCTAAGTGGTTTGGTGAAGGAGAGAAGTATGTTAAAGCA
GTCTTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGA
GGTTGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTA
TGCGTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACA
AAGGATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGA
CCTTGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACT
TGCCAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAA
GAAGAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGA
TGGGTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATT
GTCCCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCA
TTGGCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCG
CCCTCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAA
GTGTATCATCAGAGTCTACAAATATGAATGAGCTCCTTNCATGGAATGAA
CTATATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTAT
GTAGA
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