FC923689

Overview
NameFC923689
Unique NameFC923689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923689_ssr27 microsatellite FC923689_ssr27:27..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14523 contig Ccv1_Contig14523:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923689 vs. ExPASy Swiss-Prot
Match: ODP2_RICCN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia conorii GN=pdhC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 3
Query:  345 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE-GESAPVGAAIGILAE 569
            +I MPALS TMTEG +  W+K EGD ++ GE +  +E+DKA M+VE   +GILA IV+P+  ++ PV + I +L+E
Sbjct:    4 KILMPALSPTMTEGNLARWLKKEGDKVNPGEVIAEIETDKATMEVEAVDEGILAKIVIPQNSQNVPVNSLIAVLSE 79          
BLAST of FC923689 vs. ExPASy Swiss-Prot
Match: ODP2_RICBR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  345 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG-ESAPVGAAIGILAE 569
            ++ MPALS TMTEG +  W+K EGD ++ GE +  +E+DKA M+VE   +G LA I++P+G ++ PV + I +L E
Sbjct:    4 KLLMPALSPTMTEGNLARWLKKEGDKINPGEVIAEIETDKATMEVEAVDEGTLAKIIIPQGSQNVPVNSLIAVLIE 79          
BLAST of FC923689 vs. ExPASy Swiss-Prot
Match: ODP2_RICFE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia felis GN=pdhC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  345 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE-GESAPVGAAIGILAE 569
            +I MP LS TMTEG +  W+K EGD ++ GE +  +E+DKA M+VE   +GILA IV+P+  ++ PV + I +L+E
Sbjct:    4 KILMPVLSPTMTEGNLARWLKKEGDKVNPGEVIAEIETDKATMEVEAVDEGILAKIVIPQNSQNVPVNSLIAVLSE 79          
BLAST of FC923689 vs. ExPASy Swiss-Prot
Match: ODP2_RICPR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia prowazekii GN=pdhC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 3
Query:  345 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE-GESAPVGAAIGILAE 569
            +I MPALS TM EG +  W+K EGD ++ GE +  +E+DKA M+VE+  +GILA I++P+  ++ PV + I +L+E
Sbjct:    4 KILMPALSPTMREGNLARWLKKEGDKVNPGEVIAEIETDKATMEVESVDEGILAKIIIPQNSQNVPVNSLIAVLSE 79          
BLAST of FC923689 vs. ExPASy Swiss-Prot
Match: ODP2_RICTY (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia typhi GN=pdhC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 3
Query:  345 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE-GESAPVGAAIGILAE 569
            +I MPALS TM +G +  W+K EGD ++ GE +  +E+DKA M+VE+  +GILA I++P+  ++ PV + I +L+E
Sbjct:    4 KILMPALSPTMKDGNLARWLKKEGDKVNPGEVIAEIETDKATMEVESVDEGILAKIIIPQNSQNVPVNSLIAVLSE 79          
BLAST of FC923689 vs. ExPASy Swiss-Prot
Match: ODP2_YEAST (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Saccharomyces cerevisiae GN=PDA2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  348 IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG-ESAPVGAAIGILAE 569
            I MPALS TMT+G + +W K EGD LS GE +  +E+DKA MD E   DG LA I+VPEG +  PV   I +  E
Sbjct:   37 IGMPALSPTMTQGNLAAWTKKEGDQLSPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAVYVE 111          
BLAST of FC923689 vs. ExPASy Swiss-Prot
Match: ODP2_ZYMMO (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis GN=pdhC PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 3
Query:  345 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG-ESAPVGAAIGILAE 569
            E+ MPALS TMTEG +  W+  EGD +  G+ +  +E+DKA M+ ET   GI+A I+VPEG E+  VG  I ++AE
Sbjct:    4 EVKMPALSPTMTEGTLAKWLVKEGDAVKAGDILAEIETDKAIMEFETVDAGIIAKILVPEGSENIAVGQVIAVMAE 79          
BLAST of FC923689 vs. ExPASy Swiss-Prot
Match: ODPX_SCHPO (Probable pyruvate dehydrogenase protein X component, mitochondrial OS=Schizosaccharomyces pombe GN=SPCC1259.09c PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  354 MPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 575
            MPALS TM EG I  W   EGD    G+ ++ VE+DKA MDVE   +GILA +++ +G + PVG  I I+A+ E
Sbjct:   40 MPALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDKATMDVEVQDNGILAKVLIEKGSNIPVGKNIAIVADAE 113          
BLAST of FC923689 vs. ExPASy Swiss-Prot
Match: ODPX_BOVIN (Pyruvate dehydrogenase protein X component OS=Bos taurus GN=PDHX PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 3
Query:  345 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG-ESAPVGAAIGILAE 569
            +I MP+LS TM EG IV W+K EG+ +S G+++  +E+DKA + ++   DGILA IVV EG ++  +G+ IG+L E
Sbjct:   58 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVAEGSKNIRLGSLIGLLVE 133          
BLAST of FC923689 vs. ExPASy Swiss-Prot
Match: ODPX_HUMAN (Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens GN=PDHX PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 3
Query:  345 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG-ESAPVGAAIGILAE 569
            +I MP+LS TM EG IV W+K EG+ +S G+++  +E+DKA + ++   DGILA IVV EG ++  +G+ IG++ E
Sbjct:   58 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 133          
The following BLAST results are available for this feature:
BLAST of FC923689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ODP2_RICCN3.420e-1448.68Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICBR7.618e-1446.05Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICFE9.949e-1447.37Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICPR1.697e-1346.05Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICTY3.781e-1344.74Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_YEAST4.938e-1352.00Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_ZYMMO8.423e-1348.68Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODPX_SCHPO2.451e-1248.65Probable pyruvate dehydrogenase protein X componen... [more]
ODPX_BOVIN4.180e-1247.37Pyruvate dehydrogenase protein X component OS=Bos ... [more]
ODPX_HUMAN7.130e-1246.05Pyruvate dehydrogenase protein X component, mitoch... [more]

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Properties
Property NameValue
Genbank descriptionC31707H07EF StrClemenN Citrus clementina cDNA clone C31707H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923689 ID=FC923689; Name=FC923689; organism=Citrus clementina; type=EST; length=677bp
GACGGTAGCTCGAATCCTTCAACAGTCCAACCAACCAACTGTTCCTCGTC
ATCTCCGCCCCTCTGCCTTTCAACTCTATTTCATCTTCATTTTCCCTCCT
ACATTCACATTCAGATAATCACCATTCAATCACCAAATTCCTTCTTTCCA
CAAAAAAGAAAAAAGAAATGGCTACTCTTTCCCCATTCCTCTCAAAAACT
CCCCTTTCAAACACCCCCACCATTTCCTTCTCTTCTTCCATTTCCACTCC
CCTCAAATGGAAATCTATCACTTCATTCTCACCGTCCGGATCTTCTTCTT
CCCGCTCTCGCCGTCGAATCTTCATCGTCCAATCCAAAATCCGCGAGATC
TTCATGCCCGCCCTCAGTTCGACTATGACCGAGGGCAAGATCGTCTCGTG
GATCAAGTCAGAAGGCGACGTTCTTTCCAAGGGAGAAAGCGTCGTCGTTG
TGGAGTCCGATAAGGCTGACATGGATGTCGAGACCTTTTATGACGGCATT
CTCGCCGCAATTGTCGTCCCCGAAGGCGAGTCCGCTCCCGTTGGTGCCGC
TATCGGGATTCTTGCTGAGACGGAGGCGGGAGTTGCTCAAGCCAAGGCCA
AAGCCGCGTCCGCAGGGGCTGCAGCTCCTGCTTCTCATCCTGTTGCATCC
ACTCCCGTTCCAGCTGTTTCCCCACCC
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