FC923691

Overview
NameFC923691
Unique NameFC923691
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14167 contig Ccv1_Contig14167:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923691 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.626e-28
Identity = 67/187 (35.83%), Postives = 112/187 (59.89%), Query Frame = 3
Query:  177 MFDHHQWGVAFGILGNIISFLVYLAPVPTFYRIYRKKSTESFQSLPYLVALFSSMLWFYYAL--VKQNAFLLVTINYFGCVIETIYIILFITY-APKGSRNSTVKLFVSMNVGVFSLILLLTHF-LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGL 725
            M D  Q     G++GN+ISF ++ AP  TF+RI++KKS E F  +PY+  + + MLW +Y L  V +++ L+ TIN  G VIE  Y+ +++ Y   K +    +  F+++ V +   I+L+T F L  D  +   +G IC   +++++ AP   + +V++TKSVE+MPF+LS    ++A +W  Y L
Sbjct:    1 MVDAKQVRFIIGVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSL 187          
BLAST of FC923691 vs. ExPASy Swiss-Prot
Match: R1AP1_XENTR (RAG1-activating protein 1 homolog OS=Xenopus tropicalis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 43/147 (29.25%), Postives = 84/147 (57.14%), Query Frame = 3
Query:  282 KKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINYFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYG 722
            K+S E+ Q LP+L    +++ WFYY  +K +  L++ +N  G  ++T+Y+  +I Y+ +  R    ++ VS+ V +F      T +    ++R+  LG  C   ++S++ +PL+ +AQ+I++KS + + F L+    L++  W  YG
Sbjct:   32 KRSVENIQFLPFLTTDLNNLGWFYYGYLKGDGTLII-VNLIGASLQTLYMAAYILYSLE-RRYVVSQVLVSLGV-LFLAHCYFTLWTPDINSRLNQLGLFCSIFTISMYLSPLADLAQIIKSKSTKCLSFPLTVATFLTSTSWVLYG 175          
BLAST of FC923691 vs. ExPASy Swiss-Prot
Match: R1AP1_XENLA (RAG1-activating protein 1 homolog OS=Xenopus laevis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 44/153 (28.76%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  282 KKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINYFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLL-----THFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGL 725
            ++S E+ Q LP+L    +++ WFYY  +K +  L++ +N  G  ++++Y+  ++ Y+P+       + +V   V V   +LLL     T ++   ++R+  LG  C   ++S++ +PL+ +AQ+IR+KS + + F L+    L++  W  YGL
Sbjct:   32 QRSVENIQYLPFLTTDLNNLGWFYYGYLKGDGTLMI-VNVIGASLQSLYMGAYLLYSPE-------RRYVGSQVLVSLGVLLLGYCYFTLWILDLNSRLNQLGLFCSVFTISMYLSPLADLAQIIRSKSTKCLSFPLTVATFLTSSSWVLYGL 176          
BLAST of FC923691 vs. ExPASy Swiss-Prot
Match: R1AP1_PAPAN (RAG1-activating protein 1 OS=Papio anubis GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 43/149 (28.86%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  285 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINYFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYG 722
            +S ++ Q LP+L    +++ W  Y  +K +  L+V +N  G  ++T+YI+ ++ Y P   R   V L  +  +GV  L+L   +F   +     R+ +LG  C   ++S++ +PL+ +A+VI+TKS + + + L+    L++  W  YG
Sbjct:   37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDRILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQLLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATVLTSASWCLYG 179          
BLAST of FC923691 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 41/150 (27.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  279 RKKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINYFGCVIETIYIILFITYAPK--GSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYG 722
            R +S ++ Q LP+L    +++ W  Y ++K +  L++ +N  G V++T+YI+ ++ Y+P+  G    T  L   + +G     LL+    A    R+  LG  C   ++S++ +PL+ +A++++TKS + + F L+      +  W  YG
Sbjct:   35 RTRSVDNIQFLPFLTTDVNNLSWLSYGVLKGDGTLII-VNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLLLGYGYFWLLVPDLEA----RLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYG 179          
BLAST of FC923691 vs. ExPASy Swiss-Prot
Match: R1AP1_HUMAN (RAG1-activating protein 1 OS=Homo sapiens GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 43/149 (28.86%), Postives = 81/149 (54.36%), Query Frame = 3
Query:  285 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINYFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYG 722
            +S ++ Q LP+L    +++ W  Y  +K +  L+V +N  G  ++T+YI+ ++ Y P   R   V L  +  +GV  L+L   +F   +     R+  LG  C   ++S++ +PL+ +A+VI+TKS + + + L+    L++  W  YG
Sbjct:   37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYG 179          
BLAST of FC923691 vs. ExPASy Swiss-Prot
Match: R1AP1_DANRE (RAG1-activating protein 1 homolog OS=Danio rerio GN=rag1ap1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 41/151 (27.15%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  285 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINYFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGV----FSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGL 725
            +S ++ Q LP+L    +++ W YY L+K +   ++ +N  G  ++T+YI  +  Y  +  R  T  L +   + V    FSL++      +    ++  LG  C   ++S++ +PL+ +  ++RTKSVE + F L+     ++  W  YGL
Sbjct:   33 QSADNVQFLPFLTTCLNNLGWLYYGLLKGDG-TVIFVNIIGAFLQTVYIATYCHYTKEKRRVYTQTLLMVSVLCVAWVYFSLVI------SPGEAQLSQLGLTCSVFTISMYLSPLADLLDIMRTKSVERLSFSLTVATFFTSTSWTLYGL 176          
The following BLAST results are available for this feature:
BLAST of FC923691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RPG1_ARATH3.626e-2835.83Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
R1AP1_XENTR2.523e-1329.25RAG1-activating protein 1 homolog OS=Xenopus tropi... [more]
R1AP1_XENLA2.523e-1328.76RAG1-activating protein 1 homolog OS=Xenopus laevi... [more]
R1AP1_PAPAN2.135e-1228.86RAG1-activating protein 1 OS=Papio anubis GN=RAG1A... [more]
R1AP1_MOUSE2.789e-1227.33RAG1-activating protein 1 OS=Mus musculus GN=Rag1a... [more]
R1AP1_HUMAN8.115e-1228.86RAG1-activating protein 1 OS=Homo sapiens GN=RAG1A... [more]
R1AP1_DANRE3.084e-1127.15RAG1-activating protein 1 homolog OS=Danio rerio G... [more]
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Properties
Property NameValue
Genbank descriptionC31707H09EF StrClemenN Citrus clementina cDNA clone C31707H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923691 ID=FC923691; Name=FC923691; organism=Citrus clementina; type=EST; length=728bp
GATCCTCGAGTTGCTTGCTTTGCATGTGTGATTGAGGGTGCTTGGCCTCT
TTTAAGGAATTGAGCTAGGGTTTCATAGTATCTTCTTTGAGATCGAGGCC
CTTGCTTGATTTTCTGCTCAAATTTCGTTGTTGAGTGTTCAAAATTCATT
TTTTGTTTGCTAAGAAAATGGCCATAATGTTCGATCACCATCAATGGGGA
GTTGCATTTGGCATCTTAGGTAACATTATCTCGTTCCTCGTGTACCTGGC
TCCGGTGCCAACATTTTACCGAATTTACAGAAAAAAATCAACAGAGAGCT
TCCAGTCTCTGCCTTATCTGGTAGCATTGTTCAGCTCAATGCTGTGGTTC
TACTATGCGCTTGTGAAACAAAATGCTTTCCTTCTCGTTACCATCAACTA
CTTTGGATGTGTCATTGAGACTATTTACATCATCCTCTTCATCACTTATG
CCCCAAAAGGCAGCCGGAACTCAACTGTCAAACTATTTGTTTCGATGAAC
GTTGGAGTGTTCTCTTTGATTCTTCTTCTCACACACTTTCTTGCAACCGA
TTCAACTCGGATCCTAATTCTTGGTTGGATTTGTGTTGCCGTTTCTGTTA
GTGTCTTCGCAGCACCCTTAAGCATTGTTGCACAAGTTATCCGAACAAAA
AGTGTTGAGTTCATGCCATTCATCCTATCATTTTTTCTTACGCTGAGTGC
AATTATGTGGTTCGCTTACGGTCTTTTT
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