FC923692

Overview
NameFC923692
Unique NameFC923692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3419 contig Ccv1_Contig3419:345..1052. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923692 vs. ExPASy Swiss-Prot
Match: IN37_SPIOL (37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 4.269e-119
Identity = 199/226 (88.05%), Postives = 212/226 (93.81%), Query Frame = 2 
Query:    2 KCSLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVXXXXXXXXXXIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGV 679
            KC+LSA+ RPASQPRFIQ+K+EAFWFYRFLSIVYD++INPGHWTEDMRD ALEPADL+NRNMLVVDV          I+KHVD KNVTILDQSPHQLAKAK K+PLKEC+I+EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGV
Sbjct:   58 KCTLSASERPASQPRFIQNKQEAFWFYRFLSIVYDNIINPGHWTEDMRDVALEPADLNNRNMLVVDVGGGTGFTTLGIIKHVDPKNVTILDQSPHQLAKAKAKKPLKECRIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGV 283
The following BLAST results are available for this feature:
BLAST of FC923692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IN37_SPIOL4.269e-11988.0537 kDa inner envelope membrane protein, chloroplas... [more]
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Properties
Property NameValue
Genbank descriptionC31707H10EF StrClemenN Citrus clementina cDNA clone C31707H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923692 ID=FC923692; Name=FC923692; organism=Citrus clementina; type=EST; length=708bp
CAAGTGCAGTTTATCAGCAACCTCTAGGCCAGCCTCACAGCCGAGATTCA
TTCAACACAAAAAGGAGGCATTTTGGTTTTACAGATTTCTCTCAATTGTG
TATGACCATGTGATAAACCCCGGTCATTGGACTGAGGACATGAGAGACGA
TGCACTAGAGCCCGCTGATCTCAGCAACAGGAACATGCTTGTGGTTGATG
TTGGCGGCGGCACTGGCTTTACCACTCTTGGTATTGTTAAACATGTGGAT
GCCAAGAATGTTACAATTCTTGATCAGTCACCTCATCAGCTTGCTAAGGC
TAAGCAAAAGGAGCCACTGAAAGAATGTAAGATTGTTGAGGGCGATGCCG
AGGATTTACCATTTCCTACCGATTATGCTGATAGATATGTTTCTGCTGGG
AGTATTGAGTACTGGCCAGATCCACAACGTGGCATCAGGGAGGCATACAG
AGTCTTGAAGCTCGGAGGAAAGGCCTGTATAATTGGTCCTGTGTATCCAA
CATTTTGGTTGTCTCGCTATTTTGCTGATGTTTGGATGCTGTTCCCAAAA
GAGGAAGAATACATTGAGTGGTTCCAGAAGGCTGGATTCAAGGATGTCCA
ACTGAAAAGGATTGGACCAAAATGGTATCGTGGTGTTCGCCGGCATGGGT
TGATCATGGGTTGTTCTGTGACAGGTGTTAACCTGCATCANGGGACTCAC
CATTGCAG
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