FC923695

Overview
NameFC923695
Unique NameFC923695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923695_ssr59 microsatellite FC923695_ssr59:59..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9969 contig Ccv1_Contig9969:338..1088. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923695 vs. ExPASy Swiss-Prot
Match: RBM25_MOUSE (RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.160e-24
Identity = 57/144 (39.58%), Postives = 90/144 (62.50%), Query Frame = 2 
Query:  302 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGL 730
            DED++    + K   LD   D ++     V T + +K +  K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++ S    H     +L+ +  +LD+EAE+F++KMWR+LI+E +  + GL
Sbjct:  698 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 839
[Close]
BLAST of FC923695 vs. ExPASy Swiss-Prot
Match: RBM25_HUMAN (RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.160e-24
Identity = 57/144 (39.58%), Postives = 90/144 (62.50%), Query Frame = 2 
Query:  302 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGL 730
            DED++    + K   LD   D ++     V T + +K +  K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++ S    H     +L+ +  +LD+EAE+F++KMWR+LI+E +  + GL
Sbjct:  700 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 841
The following BLAST results are available for this feature:
BLAST of FC923695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RBM25_MOUSE1.160e-2439.58RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE... [more]
RBM25_HUMAN1.160e-2439.58RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE... [more]
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Properties
Property NameValue
Genbank descriptionC31708A01EF StrClemenN Citrus clementina cDNA clone C31708A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923695 ID=FC923695; Name=FC923695; organism=Citrus clementina; type=EST; length=751bp
GTTTGGTCTTGTTGGCTCTGGAAAACGTACAGCTGTCCCTTCTGTTTTCC
ATGTTGAGGATGATGATGATGCCGACAAGGATAAAAAGATGAGGCCGTTG
GTTCCCATTGATTACTCAACTGAGGAACTGCAGGCAGCCCAACCTCATGT
CTCTGGGGCAAACCCTCCGAATTTGGCTGCAGCAGCAGAATTTGCGAAGC
GTATTTCAAATGTTAATTCCAAAGAAGAGAAATCTGATGCAGAAAGAGAA
AGAAGTAGACGCTTGCACGATAGGTCAAGCCAGAGGGAGAAGGACCGGAG
TGATGAGGATAATAATCGCACCAGAGATGAGCACAAAGAGAAGATTCTTG
ACAGGGACAGAGATCGGGAACATGGTTTGGATAAAGTGAAGACGCCAGAT
AACAAGAAACTTTTGGATGCAAAACAATTGATTGATATGATCCCTAAGAC
AAAGGAGGAGTTGTTCTCATATGAGATAAATTGGGCCGTGTACGACAAGC
ATGAGCTGCATGAGAGAATGAGACCGTGGATTTCAAAGAAGATTACAGAG
TTTCTCGGAGAAGAAGAAACTACTTTGGTAGACTATATTGTATCCAGTAC
TCAAGACCATGTGAAGGCATCCCAAATGTTGGAGTTGCTACAAACTATTT
TAGACGATGAAGCTGAAATGTTTGTCCTTAAGATGTGGAGGATGCTCATC
TTTGAAATCAAGAAGGTAGAGACGGGTCTTGCGTTGAGATCAAAATCCTA
A
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