FC923698

Overview
NameFC923698
Unique NameFC923698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig396 contig Ccv1_Contig396:1067..1788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923698 vs. ExPASy Swiss-Prot
Match: TAL_FRASN (Transaldolase OS=Frankia sp. (strain EAN1pec) GN=tal PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.472e-29
Identity = 72/155 (46.45%), Postives = 90/155 (58.06%), Query Frame = 1
Query:    1 DKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANS 462
            D  L KIGTP+A  LR                  FS PRW+ L   GAK QR LWASTS K+P  PDTLYV  LI P TV+TMP+  L+AF DHG V   TI  N  +A  + + L +LG+D   V   LE+EGV  F+ S++ LLDT++E+  S
Sbjct:  212 DGRLAKIGTPKAEALRSKAAIANARLAYELYEKIFSTPRWERLAAAGAKPQRPLWASTSTKDPGLPDTLYVTELIAPGTVNTMPEATLEAFADHGVVPGDTITPNYEDARAVLAELTELGVDMADVVEVLEVEGVRKFEDSWNQLLDTIREQLGS 366          
BLAST of FC923698 vs. ExPASy Swiss-Prot
Match: TAL_RENSM (Transaldolase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=tal PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.216e-29
Identity = 71/155 (45.81%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    1 DKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANS 462
            DK L+ + T EA  L+G                 FS  RW  L + GA  QR LWAST VK+PAYPDTLYV  L+ P+ V+TMP++ L A  DHG VS  TI     EA G+ +ALE LGI +N V   LE EG++ F  S+  LLD +Q+  NS
Sbjct:  212 DKRLDALNTDEAKSLKGKAGVANARLAYQVFEEVFSSERWALLAEAGALPQRPLWASTGVKDPAYPDTLYVTELVAPNVVNTMPEKTLDATADHGVVSGNTISGRYDEANGVLNALEGLGISYNEVVALLEKEGLEKFVASWKELLDHVQDALNS 366          
BLAST of FC923698 vs. ExPASy Swiss-Prot
Match: TAL_FRASC (Transaldolase OS=Frankia sp. (strain CcI3) GN=tal PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.602e-28
Identity = 70/149 (46.98%), Postives = 89/149 (59.73%), Query Frame = 1
Query:    1 DKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTL 444
            D+ LEKIGT EA  LRG                 F+ PRW AL   GAK QR LWASTS K+P+ PDT+YV  LI P TV+TMP+  L+AF DHG+V+  TI     EA  +++ L  +GID + V   LE +GV  F+ S+  LLDT+
Sbjct:  212 DQRLEKIGTSEAKALRGRAAVANARLAFERYEKAFATPRWAALAAAGAKPQRPLWASTSTKDPSLPDTIYVTELIAPGTVNTMPEATLEAFADHGSVTGETIRPRYEEAHEVFAQLTAVGIDLDDVIETLESQGVQKFEDSWTQLLDTI 360          
BLAST of FC923698 vs. ExPASy Swiss-Prot
Match: TAL_FRAAA (Transaldolase OS=Frankia alni (strain ACN14a) GN=tal PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.092e-28
Identity = 68/152 (44.74%), Postives = 91/152 (59.87%), Query Frame = 1
Query:    1 DKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEK 453
            D  L+KIGTPEA  L                   F+ PRW AL  KGAK QR LWASTS K+P+ PDT+YV+ LI P TV+TMP+  LQAF DHG V   TI  +  +A  +++AL  +G+D + V   LE +GV  F+ S++ LL T+ ++
Sbjct:  212 DARLDKIGTPEAKALHAKTAIANARLAYERYEKAFATPRWKALAAKGAKPQRPLWASTSTKDPSLPDTIYVSELIAPGTVNTMPEATLQAFADHGQVKGETIRPHYDDARQVFAALAAVGVDIDDVIETLETQGVQKFEDSWNQLLGTIAQQ 363          
BLAST of FC923698 vs. ExPASy Swiss-Prot
Match: TAL_ARTCA (Transaldolase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=tal PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.558e-26
Identity = 68/160 (42.50%), Postives = 88/160 (55.00%), Query Frame = 1
Query:    1 DKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSLKLVS 477
            DK L+KIGT EA  L+G                 F+  RW  L + GA  QR LWAST VK+PAYPDTLYV  L+ P  V+TMP++ L A  DHG V+  T+    ++A     ALEKLG+ +N V   LE EG+D F  S+  LL  ++    S +  S
Sbjct:  212 DKRLDKIGTDEAKALKGKAGLANARLAYQVYEELFATERWALLAEAGALPQRPLWASTGVKDPAYPDTLYVTELVAPGVVNTMPEKTLDATFDHGVVTGDTVSGTYADANATLDALEKLGVSYNEVVALLESEGLDKFVASWKELLADVEGALASARKAS 371          
BLAST of FC923698 vs. ExPASy Swiss-Prot
Match: TAL_MYCUA (Transaldolase OS=Mycobacterium ulcerans (strain Agy99) GN=tal PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25
Identity = 68/157 (43.31%), Postives = 91/157 (57.96%), Query Frame = 1
Query:    1 DKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGP-RWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSL 465
            D  LE+IG+ EAL LRG                 F G  R+ AL ++GA+ QR LWAST VKNP Y DTLYV  L+ P TV+TMP++ L A  DHG V   +I     +A+ ++  LE +GID + V   LE EGV+ F+ S+  LLD  Q + ++L
Sbjct:  215 DNRLEQIGSAEALALRGQAGVANARLAYAAYQEVFEGDARYQALKERGARVQRPLWASTGVKNPDYSDTLYVTELVAPHTVNTMPEKTLDAVADHGVVKGDSITGTSGDAQQVFDKLEAIGIDLSDVFDVLESEGVEKFEASWKELLDATQAQLDAL 371          
BLAST of FC923698 vs. ExPASy Swiss-Prot
Match: TAL_MYCMM (Transaldolase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tal PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25
Identity = 68/157 (43.31%), Postives = 91/157 (57.96%), Query Frame = 1
Query:    1 DKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGP-RWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSL 465
            D  LE+IG+ EAL LRG                 F G  R+ AL ++GA+ QR LWAST VKNP Y DTLYV  L+ P TV+TMP++ L A  DHG V   +I     +A+ ++  LE +GID + V   LE EGV+ F+ S+  LLD  Q + ++L
Sbjct:  215 DNRLEQIGSAEALALRGQAGVANARLAYAAYQEVFEGDARYQALKERGARVQRPLWASTGVKNPDYSDTLYVTELVAPHTVNTMPEKTLDAVADHGVVKGDSITGTSGDAQQVFDKLEAIGIDLSDVFDVLESEGVEKFEASWKELLDATQAQLDAL 371          
BLAST of FC923698 vs. ExPASy Swiss-Prot
Match: TAL2_STRAW (Transaldolase 2 OS=Streptomyces avermitilis GN=tal2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.658e-25
Identity = 67/156 (42.95%), Postives = 88/156 (56.41%), Query Frame = 1
Query:    1 DKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSL 465
            DK ++ +GTPEA   RG                 FS  RW AL K  A KQR LWAST VK+PAY DT+YV  L+ P+TV+TMP+  L+A  DHG +   TI     +A     A+EKLGI ++ V   LE EGVD F+ S++ LL + + +   L
Sbjct:  212 DKRIDALGTPEAKAARGKAGLANARLAYEAYEAVFSTDRWLALDKAQANKQRPLWASTGVKDPAYKDTMYVEELVAPNTVNTMPEATLEATADHGEIRGNTIAGTYEQARADLDAVEKLGIAYDDVVQLLEEEGVDKFEASWNDLLKSTEAELQRL 367          
BLAST of FC923698 vs. ExPASy Swiss-Prot
Match: TAL_THEFY (Transaldolase OS=Thermobifida fusca (strain YX) GN=tal PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.165e-25
Identity = 65/152 (42.76%), Postives = 84/152 (55.26%), Query Frame = 1
Query:    1 DKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEK 453
            DK L KI T EA+ LRG                 FS  RW AL + GA+ QR LWAST VK+P  PDTLYV  L+ P TV+TMP   L A  DHG ++  T+  +   A     A+E +G+  + V   LE EGVD F KS++ LLD + ++
Sbjct:  212 DKRLSKIATEEAVALRGKTALANARLAYAAYEEVFSSARWTALAQAGARPQRPLWASTGVKDPELPDTLYVTELVAPGTVNTMPQATLDAVADHGTITGDTVRGHYDAARAHLDAVESVGVSMSDVVETLEDEGVDKFVKSWEELLDRVAQQ 363          
BLAST of FC923698 vs. ExPASy Swiss-Prot
Match: TAL_ARTS2 (Transaldolase OS=Arthrobacter sp. (strain FB24) GN=tal PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 66/160 (41.25%), Postives = 86/160 (53.75%), Query Frame = 1
Query:    1 DKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSLKLVS 477
            DK L+ IGT EA  L+G                 FS  RW  L + GA  QR LWAST VK+P+YPDTLYV  L+ P  V+TMP++ L A  DHG V+  T+     +A    +AL+ LGI +N V   LE EG+D F  S+  LL  ++    S +  S
Sbjct:  212 DKRLDAIGTDEAKALKGKAGLANARLAYQVYEELFSTERWALLAEAGALPQRPLWASTGVKDPSYPDTLYVTELVAPGVVNTMPEKTLDATFDHGVVTGDTVTRGYDDANATLNALDALGISYNDVVALLESEGLDKFVASWKELLGDVEGALASARKAS 371          
The following BLAST results are available for this feature:
BLAST of FC923698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TAL_FRASN2.472e-2946.45Transaldolase OS=Frankia sp. (strain EAN1pec) GN=t... [more]
TAL_RENSM4.216e-2945.81Transaldolase OS=Renibacterium salmoninarum (strai... [more]
TAL_FRASC1.602e-2846.98Transaldolase OS=Frankia sp. (strain CcI3) GN=tal ... [more]
TAL_FRAAA2.092e-2844.74Transaldolase OS=Frankia alni (strain ACN14a) GN=t... [more]
TAL_ARTCA2.558e-2642.50Transaldolase OS=Arthrobacter chlorophenolicus (st... [more]
TAL_MYCUA1.269e-2543.31Transaldolase OS=Mycobacterium ulcerans (strain Ag... [more]
TAL_MYCMM1.269e-2543.31Transaldolase OS=Mycobacterium marinum (strain ATC... [more]
TAL2_STRAW1.658e-2542.95Transaldolase 2 OS=Streptomyces avermitilis GN=tal... [more]
TAL_THEFY2.165e-2542.76Transaldolase OS=Thermobifida fusca (strain YX) GN... [more]
TAL_ARTS28.228e-2541.25Transaldolase OS=Arthrobacter sp. (strain FB24) GN... [more]

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Properties
Property NameValue
Genbank descriptionC31708A04EF StrClemenN Citrus clementina cDNA clone C31708A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923698 ID=FC923698; Name=FC923698; organism=Citrus clementina; type=EST; length=722bp
GACAAAATGCTTGAAAAGATTGGAACCCCAGAAGCCCTAGATCTCCGAGG
AAAGGCAGCAGTAGCTCAGGCAGCTCTAGCATACCAGCTGTACCAGAAGA
AGTTCTCTGGTCCAAGATGGGACGCTCTTGTGAAGAAAGGTGCAAAGAAG
CAGAGACTTCTGTGGGCCTCAACCAGTGTAAAGAATCCTGCCTACCCTGA
CACTCTATATGTTGCTCCTCTCATTGGACCTGATACGGTTTCAACCATGC
CAGACCAAGCTCTCCAAGCATTTGTTGATCATGGTGCAGTTTCAAGAACA
ATTGACTTGAATGTTTCTGAGGCTGAAGGCATTTACAGTGCACTGGAGAA
GTTGGGAATTGATTGGAACTACGTTGGCACTCAACTCGAACTTGAAGGGG
TAGATTCTTTCAAGAAGAGCTTTGATAGTCTGCTGGATACCCTGCAAGAG
AAGGCAAACTCTCTCAAGCTGGTTAGTCTGTAAACTGTAATTGTTTTTTT
TTTGCTTAAAACCCACTTGGCGCAGCTGCGCTGTGCCCTCACCTATGTTT
TTGGAGAAATTTTCACCAAGAATGCAGCGCAGCTGCCCCAATCGGACTCT
TATTTTCCGTTGTGACTGAAATAAATTTAGTGGGTTTTCAATCCCCTTCC
CATAATCTGTATGACAATAATTATTATGTATGATAAGTGTTTTTAGTACA
AAAAAAAAAAAAAAAAAAAAAA
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