FC923703

Overview
NameFC923703
Unique NameFC923703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig942 contig Ccv1_Contig942:231..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923703 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.426e-28
Identity = 73/159 (45.91%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  215 IVKDGHQWRKYGQKVTKDNPSPRAYFRCLMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSINGPPH 691
            +VKDG+QWRKYGQKVT+DNPSPRAYF+C  A S C VKKKVQR +ED+S LVATYEGEHNH +  S +  ++ L  + S   S           S    VT  + +  S + T P   +      K  +E+  +SLTKDP+FT A+A AV   +    H
Sbjct:  144 VVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPS-CSVKKKVQRSVEDQSVLVATYEGEHNHPMP-SQIDSNNGLNRHISHGGSASTPVAANRRSSLTVPVT-TVDMIESKKVTSPTSRIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVTGKLYQQNH 299          
BLAST of FC923703 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.286e-25
Identity = 75/156 (48.08%), Postives = 92/156 (58.97%), Query Frame = 2
Query:  218 VKDGHQWRKYGQKVTKDNPSPRAYFRCLMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQ---ETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSI 676
            VKDG QWRKYGQKVT+DNPSPRAYFRC  A S CPVKKKVQR  ED S LVATYEG HNH      LG ++S  +               T+    S VTLDL ++G ++   E     N MQ    +  I++  +SLTKD  FT A+A A++  +
Sbjct:  175 VKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPS-CPVKKKVQRSAEDPSLLVATYEGTHNH------LGPNASEGD--------------ATSQGGSSTVTLDL-VNGCHRLALEKNERDNTMQ----EVLIQQMASSLTKDSKFTAALAAAISGRL 304          
BLAST of FC923703 vs. ExPASy Swiss-Prot
Match: WRK60_ARATH (Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.300e-24
Identity = 67/154 (43.51%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  218 VKDGHQWRKYGQKVTKDNPSPRAYFRCLMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQ-ETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSI 676
            VKDG+QWRKYGQK+T+DNPSPRAYFRC  + S C VKKKVQR  ED SFLVATYEG HNH    +S+ ++                            V LDL   G    E +  R  +Q    +  +++  +SLTKDP FT A+A A++  +
Sbjct:  145 VKDGYQWRKYGQKITRDNPSPRAYFRCSFSPS-CLVKKKVQRSAEDPSFLVATYEGTHNHTGPHASVSRT----------------------------VKLDLVQGGLEPVEEKKERGTIQ----EVLVQQMASSLTKDPKFTAALATAISGRL 265          
BLAST of FC923703 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.988e-22
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  218 VKDGHQWRKYGQKVTKDNPSPRAYFRCLMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQ 577
            + DG QWRKYGQK+ K NP PRAY+RC +A+S CPV+K+VQRC ED S L++TYEG HNH +  S+   +S+ +   S   S          D  G    L+ +LSG+N   +P  + +Q
Sbjct:  190 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIAAS-CPVRKQVQRCSEDMSILISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADLHG----LNFSLSGNNITPKPKTHFLQ 304          
BLAST of FC923703 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21
Identity = 71/227 (31.28%), Postives = 97/227 (42.73%), Query Frame = 2
Query:  215 IVKDGHQWRKYGQKVTKDNPSPRAYFRCLMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSS-------------------IVHCPDYQTTDSFGS---DVTLDLTLS--GSNQETRPPRNLMQVCDD-------------------------------------------KKKIEEYVASLTKDPSFTIAVADAVASSINGPPHR 694
            ++ DG QWRKYGQK+ K NP PRAY+RC MA  GCPV+K+VQRC ED+S L+ TYEG HNH +  ++   +S+ T   S   S                   I+ C     T S  +    +TLDLT S  G+N        LMQ                                                + +    A++  DP+F  A+A A+ S +NG  H+
Sbjct:  295 MISDGCQWRKYGQKMAKGNPCPRAYYRCTMAG-GCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARAILPCSSSMATISASAPFPTITLDLTNSPNGNNPNMTTNNPLMQFAQRPGFNPAVLPQVVGQAMYNNQQQSKFSGLQLPAQPLQIAATSSVAESVSAASAAIASDPNFAAALAAAITSIMNGSSHQ 520          
BLAST of FC923703 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.608e-21
Identity = 43/75 (57.33%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  215 IVKDGHQWRKYGQKVTKDNPSPRAYFRCLMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 439
            ++ DG QWRKYGQK+ K NP PRAY+RC MA+ GCPV+K+VQRC ED+S L+ TYEG HNH +  +++  +S+ T
Sbjct:  310 MISDGCQWRKYGQKMAKGNPCPRAYYRCTMAT-GCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAVAMASTTT 383          
BLAST of FC923703 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.695e-20
Identity = 70/212 (33.02%), Postives = 97/212 (45.75%), Query Frame = 2
Query:  218 VKDGHQWRKYGQKVTKDNPSPRAYFRCLMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSL---------------GQSSSLTNY------CSPKSSIVHCPDYQTTDSFGS------DVTLDLT------------------------------LSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSING 682
            V DG QWRKYGQK+ K NP PRAY+RC MA  GCPV+K+VQRC ED + L  TYEG HNH +  S+                G SSS  +        +  SS  H   Y +T +  S       +TLDLT                              ++ +NQ+   P         ++ ++   A++  DP+FT A+A A+++ I G
Sbjct:  238 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMA-VGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSNLHQTLSSPSATSSSSFYHNFPYTSTIATLSASAPFPTITLDLTNPPRPLQPPPQFLSQYGPAAFLPNANQIRSMNNNNQQLLIPNLFGPQAPPREMVDSVRAAIAMDPNFTAALAAAISNIIGG 448          
BLAST of FC923703 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.932e-20
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  215 IVKDGHQWRKYGQKVTKDNPSPRAYFRCLMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 439
            ++ DG QWRKYGQK+ K NP PRAY+RC MA  GCPV+K+VQRC ED++ L+ TYEG HNH +  +++  +S+ T
Sbjct:  290 MLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAV-GCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTT 363          
BLAST of FC923703 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.099e-19
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 2
Query:  218 VKDGHQWRKYGQKVTKDNPSPRAYFRCLMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTN----YCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQET 553
            + DG QWRKYGQK  K NP PRAY+RC +A  GCPV+K+VQRC+ED S L+ TYEG HNH +   +   +S+ +           ++ H   YQT  +  S +      S  N  T
Sbjct:  234 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVAP-GCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASTSPFLLLDSSDNLSHPSYYQTPQAIDSSLITYPQNSSYNNRT 348          
BLAST of FC923703 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  218 VKDGHQWRKYGQKVTKDNPSPRAYFRCLMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSS 433
            + DG QWRKYGQK+ K NP PRAY+RC +A  GCPV+K+VQRC +D S L+ TYEG H+H +  S+   +S+
Sbjct:  226 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVA-PGCPVRKQVQRCADDMSILITTYEGTHSHSLPLSATTMAST 296          
The following BLAST results are available for this feature:
BLAST of FC923703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
WRK40_ARATH6.426e-2845.91Probable WRKY transcription factor 40 OS=Arabidops... [more]
WRK18_ARATH2.286e-2548.08WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRK60_ARATH3.300e-2443.51Probable WRKY transcription factor 60 OS=Arabidops... [more]
WRK61_ARATH8.988e-2244.17Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRK31_ARATH5.826e-2131.28Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRKY6_ARATH7.608e-2157.33WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK47_ARATH1.695e-2033.02Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK42_ARATH4.932e-2056.00Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRKY9_ARATH1.099e-1942.24Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK72_ARATH2.072e-1855.56Probable WRKY transcription factor 72 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC31708A09EF StrClemenN Citrus clementina cDNA clone C31708A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923703 ID=FC923703; Name=FC923703; organism=Citrus clementina; type=EST; length=742bp
CACTTCAACAATAATATTAATATTGGAGGAGTTACAGCACAAGTTCCTCC
TGTTCCAAATGCCAAGCAATCAAGAATCTTTGTGAAAGCAGATTCTAAGG
ACAGTAGCCTTGTAAGTACTTTTCCTATAACAGCGAGCGAGGCTTTACCA
GTTGAACTAATTAGTTAGTTTCCACAAATTTAGTTATTGCTTCATTCTTA
ATCGTGACTTTTAGATCGTGAAAGATGGACATCAATGGAGAAAGTACGGC
CAAAAGGTTACTAAAGATAATCCCTCACCTCGGGCTTATTTCAGATGTTT
AATGGCTTCTTCTGGATGTCCTGTAAAAAAAAAGGTTCAAAGATGCATGG
AGGACAAGTCATTTCTCGTTGCAACTTATGAAGGAGAACACAACCATGAT
GTTCAATGTAGCTCACTTGGGCAATCCTCCTCTTTAACAAATTATTGCTC
ACCCAAAAGCTCAATTGTACATTGCCCAGATTATCAAACAACTGATTCTT
TTGGATCAGATGTCACACTTGATCTTACTCTATCTGGGTCCAATCAAGAA
ACTAGACCCCCTAGAAACTTGATGCAAGTCTGTGACGATAAAAAGAAGAT
TGAAGAATATGTGGCATCCTTAACTAAAGATCCCAGCTTCACCATAGCTG
TAGCCGATGCTGTTGCAAGTTCCATCAATGGCCCCCCACATAGACCAATG
TGAACATTTGGGGACTGATACATGGATTCTGTNATCTATTCG
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