FC923704

Overview
NameFC923704
Unique NameFC923704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14524 contig Ccv1_Contig14524:1..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923704 vs. ExPASy Swiss-Prot
Match: SYP71_ARATH (Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.814e-70
Identity = 142/229 (62.01%), Postives = 165/229 (72.05%), Query Frame = 3
Query:    9 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPD--XXXXXXXXXXXXXXXXXXXXIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVDRATSDLKST 689
            M+VID++TRVD+IC            E N+ GDDAFARLYG  +  ++ AL+K+E    EKNRA AVAMNAEIRRTKARL EEV KLQRLA K+VKGL+ EEL AR+DLV AL  RIE IPD                      IKFD  S G+FDD+YFQE+ ESS FRQEYEMR++KQ+QGLD+I EGLD LKNMA DMNEE+DRQVP+MDEID KVDRATSDLK+T
Sbjct:    1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKEKNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAIPDGTAGGPKSTSAWTPSSTTSRPDIKFD--SDGRFDDDYFQESNESSQFRQEYEMRKIKQEQGLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNT 227          

HSP 2 Score: 25.0238 bits (53), Expect = 1.814e-70
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  689 HVRLKXYSTQLRSSRNF 739
            +VRLK    QLRSSRNF
Sbjct:  228 NVRLKDTVNQLRSSRNF 244          
BLAST of FC923704 vs. ExPASy Swiss-Prot
Match: SYP72_ARATH (Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.150e-63
Identity = 128/229 (55.90%), Postives = 161/229 (70.31%), Query Frame = 3
Query:    9 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPD--XXXXXXXXXXXXXXXXXXXXIKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVDRATSDLKST 689
            M VID+I RVD IC            E+   GDDAF+RL+  + +D++A L+K+E A+TEKNRA AVAMNAE+RRTKARL E+V KLQ+LA KK+KGL++EE E+R DLV AL DR++ IPD                      IKFD  S    DD +FQ++EESS FRQEYEMRR KQD+GLD+I EGLD LKN+A DMNEE+D+QVP+M+E++ KVD ATSDLK+T
Sbjct:    1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTEKNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAIPDGNEHGAKQANSDWGGASAPNKNIKFD-MSEEDMDDGFFQQSEESSQFRQEYEMRRKKQDEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGATSDLKNT 228          

HSP 2 Score: 24.6386 bits (52), Expect = 1.150e-63
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  689 HVRLKXYSTQLRSSRNF 739
            +VRLK    Q+RSSRNF
Sbjct:  229 NVRLKKQLVQMRSSRNF 245          
BLAST of FC923704 vs. ExPASy Swiss-Prot
Match: SYP73_ARATH (Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.724e-62
Identity = 130/228 (57.02%), Postives = 159/228 (69.74%), Query Frame = 3
Query:    9 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDXXXXXXXXXXXXXXXXXXXXIKFDT-YSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVIGEGLDTLKNMAHDMNEEIDRQVPMMDEIDEKVDRATSDLKST 689
            M VIDLITRVD+IC            + NV GDDAF+RLY  V+  L+  LQK+E  ++E N+A AVAMNAEIRRTKARLLE + KLQRL+ KKVKGLSKEEL+AR+DLV +L+D+IE IP+                    I+FDT  S  +   EYFQ T ES  F+QEYEM+R+KQ + LD I EGLDTLKNMA D+NEE+DRQ P+MDEID K+D+A +DLKST
Sbjct:    1 MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSETNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEAIPE---SSAPVVGGWEASTSYSNIRFDTNVSDDRIGSEYFQPTGESDQFKQEYEMKRIKQAR-LDYIAEGLDTLKNMAQDINEELDRQEPLMDEIDTKIDKAATDLKST 224          

HSP 2 Score: 25.409 bits (54), Expect = 4.724e-62
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  689 HVRLKXYSTQLRSSRNF 739
            +VRLK   T+LRSSRNF
Sbjct:  225 NVRLKDTVTKLRSSRNF 241          
The following BLAST results are available for this feature:
BLAST of FC923704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP71_ARATH1.814e-7062.01Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 ... [more]
SYP72_ARATH1.150e-6355.90Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 ... [more]
SYP73_ARATH4.724e-6257.02Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionC31708A10EF StrClemenN Citrus clementina cDNA clone C31708A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923704 ID=FC923704; Name=FC923704; organism=Citrus clementina; type=EST; length=778bp
GAGAGAAAATGAGTGTGATAGATTTGATCACAAGAGTCGACGCGATTTGC
AAGAAATATGACAAGTACGATGTCGATAAACAAAAAGAGCTCAACGTCTA
CGGCGACGACGCTTTCGCTCGCCTGTACGGCGTCGTTCAGGCCGACCTCG
ACGCTGCTCTGCAGAAATCGGAGGCGGCAGCAACAGAGAAAAATCGTGCG
ACGGCAGTTGCGATGAACGCGGAGATACGAAGAACAAAAGCTAGGTTGCT
TGAAGAAGTGGCTAAATTACAAAGACTTGCTTTTAAAAAGGTAAAAGGGC
TTTCAAAAGAGGAACTTGAGGCTCGAAGTGACTTAGTTGCTGCTCTCAAA
GATAGAATTGAAGGGATACCTGATGGTTCAACAGCTGCAGCTAAACAAAC
TGGTGGTGGGACAACTTCGGCCTCATACACAGGAATCAAATTTGACACTT
ATTCAGGTGGGAAATTTGATGATGAATATTTCCAAGAAACCGAAGAGTCG
AGTGGGTTTAGGCAAGAGTATGAGATGCGGAGAATGAAACAGGACCAAGG
TTTAGATGTTATAGGGGAAGGTTTGGACACATTGAAGAACATGGCTCATG
ACATGAATGAGGAAATTGACAGGCAAGTGCCCATGATGGATGAAATTGAT
GAAAAGGTTGACAGGGCAACCTCTGATCTGAAAAGTACCACGTGAGACTC
AAGGNATACTCTACCCAGCTGAGATCCAGTCGAAACTTCTGCATTGATAT
CATCCTCTTGTGCANTATCCTAGGAATT
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