FC923706

Overview
NameFC923706
Unique NameFC923706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length340
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1346 contig Ccv1_Contig1346:378..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923706 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.480e-23
Identity = 47/55 (85.45%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 KILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 165
            ++LR+ESYWY G+GSVVAVDQDP +RYPVVVRFNKVNYANVSTNNYALDE+EEVK
Sbjct:   89 RVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143          
BLAST of FC923706 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.444e-22
Identity = 47/54 (87.04%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 KILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 162
            +I+R+ESYWY G+GSVVAVDQDPK+RYPVVVRFNKVNYANVSTNNYALDEI+EV
Sbjct:   71 RIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124          
BLAST of FC923706 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 1
Query:    1 KILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 165
            KILR+ESYWY  +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEVK
Sbjct:   91 KILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145          
BLAST of FC923706 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    1 KILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 165
            +ILR+ESYWY G GSVVA DQDP +RYPVVVRFNKVNYANVSTNNYALDEIEEVK
Sbjct:   87 RILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141          
BLAST of FC923706 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1
Query:    1 KILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 162
            KILRRESYW+  +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEV
Sbjct:   88 KILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141          
BLAST of FC923706 vs. ExPASy Swiss-Prot
Match: PSAE_HORVU (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.065e-21
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 1
Query:    1 KILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 162
            KILRRESYWYNG GSVV VDQDP +RYPVVVRF KVNYA VSTNNYALDEI+EV
Sbjct:   92 KILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEIKEV 145          
BLAST of FC923706 vs. ExPASy Swiss-Prot
Match: PSAE_THEEB (Photosystem I reaction center subunit IV OS=Thermosynechococcus elongatus (strain BP-1) GN=psaE PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.089e-13
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 KILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 162
            KILR ESYWYN +G+V +VDQ P  +YPV+VRF+KVNY       + V+TNN+AL E++EV
Sbjct:    9 KILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69          
BLAST of FC923706 vs. ExPASy Swiss-Prot
Match: PSAE_SYNEN (Photosystem I reaction center subunit IV OS=Synechococcus elongatus naegeli GN=psaE PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.089e-13
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 KILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 162
            KILR ESYWYN +G+V +VDQ P  +YPV+VRF+KVNY       + V+TNN+AL E++EV
Sbjct:    9 KILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69          
BLAST of FC923706 vs. ExPASy Swiss-Prot
Match: PSAE_GLOVI (Photosystem I reaction center subunit IV OS=Gloeobacter violaceus GN=psaE PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.729e-13
Identity = 30/55 (54.55%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 KILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 165
            +ILR+ESYWY  +G+V +VD+  K+ YPV VRF KVNY+ ++TNN+ + E+EEV+
Sbjct:   10 RILRKESYWYREVGTVASVDKSEKTIYPVTVRFEKVNYSGINTNNFGVSELEEVE 64          
BLAST of FC923706 vs. ExPASy Swiss-Prot
Match: PSAE_CYAPA (Photosystem I reaction center subunit IV OS=Cyanophora paradoxa GN=psaE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.655e-13
Identity = 32/55 (58.18%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    1 KILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 165
            +ILR+ESYWY  IG+V ++DQ    +YPV+VRF KVNY+NV++NN++LDE+ EV+
Sbjct:    9 RILRKESYWYQEIGTVASIDQSG-IKYPVIVRFEKVNYSNVNSNNFSLDEVVEVE 62          
The following BLAST results are available for this feature:
BLAST of FC923706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PSAEB_NICSY6.480e-2385.45Photosystem I reaction center subunit IV B, chloro... [more]
PSAE_SPIOL1.444e-2287.04Photosystem I reaction center subunit IV, chloropl... [more]
PSAE2_ARATH3.216e-2285.45Photosystem I reaction center subunit IV B, chloro... [more]
PSAEA_NICSY4.200e-2287.27Photosystem I reaction center subunit IV A, chloro... [more]
PSAE1_ARATH1.596e-2185.19Photosystem I reaction center subunit IV A, chloro... [more]
PSAE_HORVU6.065e-2187.04Photosystem I reaction center subunit IV, chloropl... [more]
PSAE_THEEB2.089e-1357.38Photosystem I reaction center subunit IV OS=Thermo... [more]
PSAE_SYNEN2.089e-1357.38Photosystem I reaction center subunit IV OS=Synech... [more]
PSAE_GLOVI2.729e-1354.55Photosystem I reaction center subunit IV OS=Gloeob... [more]
PSAE_CYAPA4.655e-1358.18Photosystem I reaction center subunit IV OS=Cyanop... [more]

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Properties
Property NameValue
Genbank descriptionC31708A12EF StrClemenN Citrus clementina cDNA clone C31708A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923706 ID=FC923706; Name=FC923706; organism=Citrus clementina; type=EST; length=340bp
AAGATTCTCAGGAGGGAGTCCTACTGGTACAATGGCATTGGGTCTGTGGT
TGCTGTTGACCAGGATCCCAAGAGTCGGTACCCAGTTGTGGTTCGATTCA
ACAAGGTTAACTATGCAAACGTATCAACGAACAACTATGCATTGGATGAG
ATCGAAGAAGTTAAATGAGTTATGTAATTTTGATTTGCATATTATTCCCC
GCTCTAGATTAAGCCTTTGTGTGCCAGGAATGTGTATTCTATTCTCCAAG
TGAATTCTTCTTCTGTCTACTTCGCCATCATGTTTATGCTTATCCAACGA
AAAGATGTTCACCAAAAAAAAAAAAAAAAAAAAAAAAAAA
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