FC923722

Overview
NameFC923722
Unique NameFC923722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923722 vs. ExPASy Swiss-Prot
Match: Y2179_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.122e-13
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    7 IQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYF------GVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSF 309
            I ++ ++PDP + GK  T ++     + +  G  + NVA+F       +P      D+C+ +SCP++AG F  S +  +P FTP G Y  ++T+ D++N  +TC +F
Sbjct:   36 INKLTLLPDPPLVGKEVTISLEGSLNEQITSGSSIFNVAFFINGGWRQLPTFHN--DICKVLSCPVSAGPFTYSTSIKVPIFTPHGQYKGQLTLTDQSNRNVTCLTF 140
[Close]
BLAST of FC923722 vs. ExPASy Swiss-Prot
Match: Y8295_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0278295 OS=Dictyostelium discoideum GN=DDB_G0278295 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 34/108 (31.48%), Postives = 56/108 (51.85%), Query Frame = 1 
Query:    7 IQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVC---EEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKI 321
            I  V + P   V G+  T + S +  + V GG V + V Y  + +  E   +C   + ++CPIAAGD+  + T+ +PS  P G YT  + + D+NN E+ C   +  +
Sbjct:   34 ITNVVLDPPTPVKGQDITISASGILDETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGDYQKNMTEMIPSDAPSGKYTGNVVITDQNNAEIACIDVDINL 141
The following BLAST results are available for this feature:
BLAST of FC923722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2179_DICDI8.122e-1331.78Putative phosphatidylglycerol/phosphatidylinositol... [more]
Y8295_DICDI3.412e-1131.48Putative phosphatidylglycerol/phosphatidylinositol... [more]
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Properties
Property NameValue
Genbank descriptionC31708C04EF StrClemenN Citrus clementina cDNA clone C31708C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923722 ID=FC923722; Name=FC923722; organism=Citrus clementina; type=EST; length=665bp
GTAACGATTCAGCAAGTTAAGATAATTCCTGATCCTGTAGTCACAGGCAA
GCCAGCCACCTTTAACATCTCGGCTGTTACAGGTCAAGCTGTCTATGGTG
GGAAAGTGGTGATAAATGTTGCTTACTTTGGGGTACCTGTCCATCAAGAA
ACCCGTGACGTTTGTGAGGAGGTATCGTGTCCCATTGCAGCAGGAGACTT
TGTACTGTCCCACACCCAGACTCTGCCTAGTTTCACTCCTCCGGGCTCCT
ACACACTTAAGATGACAATGGAGGACAAGAACAATGAAGAACTGACTTGC
TTTAGCTTCAACTTCAAAATTGGCTTTCATTCTCTGGTCTCTGATAGTTA
AAAGTGCCCGGTACCGTATTATGATCTCTTGCGTTTCGAACGGTCAAGTT
CATCCTTAACGCCAACCCAATGTAAACAAGTGTGCGCTCTATGTGGCTGC
TTGTATATTATTTTAGTTCTGTGTTCGATGGTGTTTGATGTTGTAAGATT
CTTGTAAGATTCGTATCTGTAATCTGTGTTCTGTCTGTGTGTTGCATTTC
TTCTGAAGGGTAAAGACGTGAATGGACTTGATTCGCGAATGGTGACTAGT
GATCCCTGAAAGTTATCGAGTCATGTGACCCTGTTGTTCAAAAAAAAAAA
AAAAAAAAAAAAAAA
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