FC923730

Overview
NameFC923730
Unique NameFC923730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923730 vs. ExPASy Swiss-Prot
Match: TATD1_XENLA (Putative deoxyribonuclease TATDN1 OS=Xenopus laevis GN=tatdn1 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.888e-60
Identity = 99/174 (56.90%), Postives = 129/174 (74.14%), Query Frame = 3
Query:  219 RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAENRDKLLTFSNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIXFV 740
            R + TVG HPTRC EFE+ GDP+++   L +L ++   KGKVVA+GECGLD+DRL FC  E Q KYFEKQF+LA  ++LPMFLH R A  +F  I++RN+DR  GGV HSF G+ E+ + ++   ++YIGINGCSLKT  NLDV++ IP ER+MIETD+P+C +KN HAG   V
Sbjct:   69 RFYSTVGCHPTRCGEFEQ-GDPDQYLAELQNLLEDN--KGKVVAVGECGLDFDRLEFCSKETQLKYFEKQFDLAERSRLPMFLHCRNAHKEFLEIMQRNRDRCVGGVVHSFDGTKEDAEAIIAL-DLYIGINGCSLKTESNLDVLKSIPSERLMIETDAPWCGVKNTHAGSKLV 238          

HSP 2 Score: 47.7506 bits (112), Expect = 1.888e-60
Identity = 20/48 (41.67%), Postives = 30/48 (62.50%), Query Frame = 1
Query:   73 MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRII 216
            M+  R IDI +N TD MF+G+Y G + H  D A ++ RA  +GV + +
Sbjct:    1 MSLYRFIDIGINLTDPMFRGLYRGTRKHQDDFADIIERAVRTGVQKFM 48          
BLAST of FC923730 vs. ExPASy Swiss-Prot
Match: TATD1_MOUSE (Putative deoxyribonuclease TATDN1 OS=Mus musculus GN=Tatdn1 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 9.278e-60
Identity = 99/173 (57.23%), Postives = 127/173 (73.41%), Query Frame = 3
Query:  225 FCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAENRDKLLTFSNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIXFVN 743
            F TVG HPTRC EFE+ G P+++   LLSLA+    KGKVVAIGECGLD+DRL FCP + Q KYFEKQFEL+  T+LPMFLH R +  +F  I+ RN+DR+ GGV HSF G+ E    L+    +YIG NGCSLKT  NL+V++ IP E++MIETD+P+C +K+ HAG  ++N
Sbjct:   71 FSTVGCHPTRCDEFEK-GSPDQYLAGLLSLAENN--KGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTQLPMFLHCRNSHTEFLDIMRRNRDRYVGGVVHSFDGTKEAAAALVDL-GLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIN 239          

HSP 2 Score: 46.595 bits (109), Expect = 9.278e-60
Identity = 20/48 (41.67%), Postives = 29/48 (60.42%), Query Frame = 1
Query:   73 MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRII 216
            M+  + +DI +N TD MF+GIY G Q H  D+  V+ RA   GV + +
Sbjct:    1 MSLFKFVDIGINLTDPMFRGIYRGVQKHQDDLQDVIERAIQIGVKKFM 48          
BLAST of FC923730 vs. ExPASy Swiss-Prot
Match: TATD1_BOVIN (Putative deoxyribonuclease TATDN1 OS=Bos taurus GN=TATDN1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.010e-58
Identity = 99/172 (57.56%), Postives = 125/172 (72.67%), Query Frame = 3
Query:  225 FCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAENRDKLLTFSNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIXFV 740
            F TVG HPTRC EFE++ DP+ +   LL+LA+    KGKVVAIGECGLD+DRL FC  + Q KYFEKQFEL+  TKLPMFLH R + A+F  I+ RN+DR  GGV HSF G+ E    L+    +YIG NGCSLKT  NL+V++ IP E++MIETD+P+C +KN HAG  ++
Sbjct:   71 FSTVGCHPTRCDEFEKN-DPDHYLMELLNLAESN--KGKVVAIGECGLDFDRLQFCSKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMRRNRDRCVGGVVHSFDGTKEAAAALMDL-GLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKNTHAGSKYI 238          

HSP 2 Score: 46.595 bits (109), Expect = 1.010e-58
Identity = 20/48 (41.67%), Postives = 29/48 (60.42%), Query Frame = 1
Query:   73 MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRII 216
            M+  + +DI +N TD MF+GIY G Q H  D+  V+ RA   GV + +
Sbjct:    1 MSRFKFVDIGINLTDPMFRGIYRGVQKHQDDLQDVIERAVQIGVKKFM 48          
BLAST of FC923730 vs. ExPASy Swiss-Prot
Match: TATD1_HUMAN (Putative deoxyribonuclease TATDN1 OS=Homo sapiens GN=TATDN1 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 1.010e-58
Identity = 98/172 (56.98%), Postives = 129/172 (75.00%), Query Frame = 3
Query:  225 FCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAENRDKLLTFSNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIXFV 740
            F TVG HPTRC EFE++ +P+ + + LL+LA+    KGKVVAIGECGLD+DRL FCP + Q KYFEKQFEL+  TKLPMFLH R + A+F  I++RN+DR  GGV HSF G+ E    L+   ++YIG NGCSLKT  NL+V++ IP E++MIETD+P+C +K+ HAG  ++
Sbjct:   71 FSTVGCHPTRCGEFEKN-NPDLYLKELLNLAENN--KGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALIDL-DLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYI 238          

HSP 2 Score: 46.9802 bits (110), Expect = 1.010e-58
Identity = 21/48 (43.75%), Postives = 29/48 (60.42%), Query Frame = 1
Query:   73 MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRII 216
            M+  + IDI +N TD MF+GIY G Q H  D+  V+ RA   GV + +
Sbjct:    1 MSRFKFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFM 48          
BLAST of FC923730 vs. ExPASy Swiss-Prot
Match: TATD1_DANRE (Putative deoxyribonuclease TATDN1 OS=Danio rerio GN=tatdn1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.468e-58
Identity = 95/174 (54.60%), Postives = 124/174 (71.26%), Query Frame = 3
Query:  219 RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAENRDKLLTFSNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIXFV 740
            + F TVG HPTRC EF++ G  +++  +LL L     +K  VVA+GECGLD+DRL FCP E Q +YF+ QF+LA A+ LPMFLH R A  +F  I+ RN+ R  GGV HSF GS ++   LL   ++YIGINGCSLKTAENL+V++ IP +R+MIETD+P+C IKN HAG   +
Sbjct:   69 QFFSTVGCHPTRCSEFDDQGS-DQYLSSLLDLTVSNTQK--VVAVGECGLDFDRLEFCPKETQLRYFQLQFDLAEASGLPMFLHCRNAHTEFIDIMRRNRQRCVGGVVHSFDGSQQDAAALLDL-DLYIGINGCSLKTAENLEVMKSIPSDRLMIETDAPWCGIKNTHAGAKLI 238          

HSP 2 Score: 50.8322 bits (120), Expect = 6.468e-58
Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = 1
Query:   73 MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRII 216
            M   R IDI +N TD MF+G+Y G Q H  D A V+ RA   GV + I
Sbjct:    1 MTNFRFIDIGINLTDPMFRGVYRGTQKHEDDFAEVVERALQVGVQKFI 48          
BLAST of FC923730 vs. ExPASy Swiss-Prot
Match: YNF8_SCHPO (Deoxyribonuclease Tat-D OS=Schizosaccharomyces pombe GN=SPBC17A3.08 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.262e-49
Identity = 85/172 (49.42%), Postives = 119/172 (69.19%), Query Frame = 3
Query:  231 TVGVHPTRCKEF-EESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRF-TGGVTHSFTGSAENRDKLLTFSNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIXFV 740
            TVGVHP + + F   S  PE +   L +LA +G   GKVVA GE GLDYDRLH+ P+++Q+ YFE+Q ++A   +LP+FLH R A  DF AI+E+        GV HSFTGS +   + +    +Y+G+NGCSLKT ENL+VVR IP+E+M++ETD+P+CE++ +HAG  F+
Sbjct:   81 TVGVHPCQAQCFLRHSEGPEDYLVKLEALANKGKASGKVVAFGEFGLDYDRLHYAPADVQKMYFEEQLKVAVRVQLPLFLHSRNAENDFFAILEKYLPELPKKGVVHSFTGSIDEMRRCIE-HGLYVGVNGCSLKTEENLEVVRAIPLEKMLLETDAPWCEVRPSHAGHQFL 251          

HSP 2 Score: 46.595 bits (109), Expect = 1.262e-49
Identity = 20/49 (40.82%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   70 FMATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRII 216
            F+ ++R  DI  N TD +F+GIYH K  H  D  +++SRA + GV++++
Sbjct:    8 FVKSLRFYDIGYNATDPVFRGIYHEKLKHPDDFDSIISRAKAVGVEKMM 56          
BLAST of FC923730 vs. ExPASy Swiss-Prot
Match: YBF5_YEAST (Deoxyribonuclease Tat-D OS=Saccharomyces cerevisiae GN=YBL055C PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 80/238 (33.61%), Postives = 118/238 (49.58%), Query Frame = 3
Query:  219 RLFCTVGVHPTRCKEFEESGDPEKHFQALLS---------------LAKEGIEKGKVV------------------AIGECGLDYDRLHFCPSEIQRKYFEKQFELAYA----TKLPMFLHMREAAADFCAIVERNKDRFTGG--------------------------VTHSFTGSAENRDKLLTFS-NMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIXFV 740
            +L+ T+GVHP    EF ++   +K   ++ +               ++     +GK+                   +IGE GLDYDR H+   E+Q+ +FE+Q +++      +  P+FLHMR A  DF  I+ER    FT                            V HSFTGSA +  KLL  S N++IG+NGCSL+T ENL VV+ IP ER+++ETD+P+CEIK  HA   ++
Sbjct:  106 KLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSFAQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSSKEMQKVFFEEQLKISCLNDKLSSYPLFLHMRSACDDFVQILERFIAGFTDERDTFQLQKLGASSSSGFYKFHPDRKLVVHSFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTHASFQYL 343          
BLAST of FC923730 vs. ExPASy Swiss-Prot
Match: TATD1_ENCCU (Putative deoxyribonuclease TATDN1 homolog OS=Encephalitozoon cuniculi GN=ECU03_0200 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.796e-28
Identity = 69/170 (40.59%), Postives = 97/170 (57.06%), Query Frame = 3
Query:  231 TVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAENRDKLLTFSNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIXFV 740
            T G+HPT    +        +   ++ L  +      VVAIGECGLDYDRL F     Q++ F  Q +L  +     F H R    DF  IV   + R   GV HSFTGS E   +L+    ++IGINGCS+KT E +++VR +P+E ++IETDSPYC+I+ ++AG  +V
Sbjct:   60 TAGIHPTSSSRYS-------NIDEIVPLVNDET----VVAIGECGLDYDRLEFADKVSQKRIFRSQLDLGGSC---YFFHSRSCHRDFMEIVSDYRIR---GVVHSFTGSIEEARELIK-KGLFIGINGCSVKTLEGIEIVRSLPLESLLIETDSPYCKIRRSYAGFEYV 211          
BLAST of FC923730 vs. ExPASy Swiss-Prot
Match: TATD1_NOSCE (Putative deoxyribonuclease TATDN1 homolog OS=Nosema ceranae (strain BRL01) GN=NCER_101798 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.034e-25
Identity = 59/139 (42.45%), Postives = 87/139 (62.59%), Query Frame = 3
Query:  327 IEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAENRDKLLTFSNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIXFVN 743
            +   + +AIGECGLDY RL F   E Q++ F+ Q +L        FLH R++  DF  I+    D    GV HSFTG+ E   +++    ++IGINGCSLK  E ++VV+ +P+  +++ETDSPYC+I+ ++AG  FVN
Sbjct:   72 VNSDRCIAIGECGLDYYRLQFSSIETQKRIFKVQLDLKAER---YFLHCRDSHRDFMEILS---DYNFKGVVHSFTGTVEESKEIIK-KGLFIGINGCSLKNEEGIEVVKNLPLNSILVETDSPYCKIRKSYAGYKFVN 203          
BLAST of FC923730 vs. ExPASy Swiss-Prot
Match: TATD1_ENTBH (Putative deoxyribonuclease TATDN1 homolog OS=Enterocytozoon bieneusi (strain H348) GN=EBI_25826 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 67/176 (38.07%), Postives = 101/176 (57.39%), Query Frame = 3
Query:  228 CTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEK------GKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAENRDKLLTFSNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIXF 737
            C  G+HPT      +    E +   +L + +  +++        ++AIGECGLDY R        Q++ F+ Q EL+Y   +P FLHMR A  DF  I+ +N    TG V HSF G+ +    L+     YIGINGCSLK   N+D+V+ IPI+++++ETDSP+C I+ ++AG  +
Sbjct:   60 CYCGIHPTHINTLYK----ENNIWNILDIVQADLKQLFVENSEYIIAIGECGLDYYRNQLKIE--QQRIFKMQLELSYLN-IPYFLHMRNAFDDFYNII-KNYTNVTG-VIHSFDGTVDQALALINLG-FYIGINGCSLKN--NIDLVKNIPIDKILVETDSPFCLIRKSYAGAEY 223          
The following BLAST results are available for this feature:
BLAST of FC923730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TATD1_XENLA1.888e-6056.90Putative deoxyribonuclease TATDN1 OS=Xenopus laevi... [more]
TATD1_MOUSE9.278e-6057.23Putative deoxyribonuclease TATDN1 OS=Mus musculus ... [more]
TATD1_BOVIN1.010e-5857.56Putative deoxyribonuclease TATDN1 OS=Bos taurus GN... [more]
TATD1_HUMAN1.010e-5856.98Putative deoxyribonuclease TATDN1 OS=Homo sapiens ... [more]
TATD1_DANRE6.468e-5854.60Putative deoxyribonuclease TATDN1 OS=Danio rerio G... [more]
YNF8_SCHPO1.262e-4949.42Deoxyribonuclease Tat-D OS=Schizosaccharomyces pom... [more]
YBF5_YEAST2.225e-2833.61Deoxyribonuclease Tat-D OS=Saccharomyces cerevisia... [more]
TATD1_ENCCU3.796e-2840.59Putative deoxyribonuclease TATDN1 homolog OS=Encep... [more]
TATD1_NOSCE1.034e-2542.45Putative deoxyribonuclease TATDN1 homolog OS=Nosem... [more]
TATD1_ENTBH2.815e-2338.07Putative deoxyribonuclease TATDN1 homolog OS=Enter... [more]

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Properties
Property NameValue
Genbank descriptionC31708C12EF StrClemenN Citrus clementina cDNA clone C31708C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923730 ID=FC923730; Name=FC923730; organism=Citrus clementina; type=EST; length=747bp
GATTATGGTTTTGGGCCACAACTATATTCGAGAAACAAAAGGGCTGAAAA
GGTAACTCTTCCTTACTTCTTCATGGCGACAATTCGTTTGATAGATATTG
CTGTCAACTTCACAGATGGCATGTTCAAAGGAATCTATCATGGCAAACAA
TGCCACGCCTCAGATATAGCAACCGTTCTTAGTCGGGCTTGGAGTTCCGG
TGTTGATCGAATCATTGAAGGCTTTTTTGCACGGTTGGTGTACACCCGAC
AAGATGCAAGGAGTTTGAAGAGAGTGGGGATCCAGAAAAGCATTTTCAGG
CTTTGTTGTCGTTGGCCAAAGAGGGAATCGAGAAAGGGAAGGTGGTAGCA
ATTGGTGAGTGTGGTTTAGACTATGACAGGCTTCACTTTTGCCCATCAGA
AATTCAAAGGAAGTATTTTGAGAAGCAGTTTGAATTAGCATATGCTACAA
AGCTGCCTATGTTCCTGCATATGCGTGAAGCTGCCGCTGATTTCTGTGCA
ATTGTAGAGCGAAATAAGGATAGGTTCACTGGTGGGGTTACCCATTCATT
TACTGGTAGTGCAGAAAATCGTGACAAACTTCTTACATTCAGCAACATGT
ATATAGGTATAAATGGTTGTTCTCTGAAGACGGCTGAGAATCTTGATGTT
GTGAGGGGCATACCAATCGAGAGAATGATGATTGAGACGGATTCTCCATA
TTGTGAAATCAAGAACGCCCATGCTGGAATTAGNTTTGTAAATCTAC
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