FC923731

Overview
NameFC923731
Unique NameFC923731
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923731 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.115e-38
Identity = 87/165 (52.73%), Postives = 113/165 (68.48%), Query Frame = 2
Query:   71 VVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGREMGD-SPKDAS--YLIESSANDNSPPNFPASDMNESYEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYL-AMLERACKILTDQILGGAVVDA 553
            +V+T+DPKPRLRWT +LH+RFVDAV QLGGP KATPK IMR M VKGLTL+HLKSHLQK+RLGKQ  +E GD S K+ S    ++   N  S     + +MNE         +QMEVQ +LH Q+E ++HLQ+R  AQ +Y+ ++LERAC+ L  + +  A   A
Sbjct:   27 LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAGENMAAATAAA 182          
BLAST of FC923731 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15
Identity = 49/112 (43.75%), Postives = 61/112 (54.46%), Query Frame = 2
Query:   53 GGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYR------LGKQSGREMGDSPKDASYLIESSANDNSPPNFPASDMNE 370
            GG+ P V     P PRLRWT +LH  FV AV  LGG  KATPK +++ M+VKGLT+ H+KSHLQ YR      LGK    E   SP       + +  D+   N P    N+
Sbjct:   13 GGVRPYV---RSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLGKP---EESSSPSSRRRRRQDNEEDHLHDNLPVHARND 118          
The following BLAST results are available for this feature:
BLAST of FC923731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APL_ARATH1.115e-3852.73Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH1.326e-1543.75Putative Myb family transcription factor At1g14600... [more]
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Properties
Property NameValue
Genbank descriptionC31708D01EF StrClemenN Citrus clementina cDNA clone C31708D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923731 ID=FC923731; Name=FC923731; organism=Citrus clementina; type=EST; length=663bp
AAAGAGAAGAATAATAAACCGGACCAGTTATCATTATCATCAGAATCACG
GAGGCGGAATAGAGCCGTGCGTGGTCATGACATCTGATCCAAAGCCTCGC
CTCCGTTGGACCGCCGACCTTCACGATCGATTCGTTGACGCCGTCACTCA
ACTAGGCGGTCCTTCCAAGGCTACACCAAAGGCTATCATGCGGACTATGA
ATGTGAAGGGACTTACTCTCTTTCACTTGAAGAGTCATCTCCAGAAATAT
AGGCTAGGTAAGCAATCGGGGAGAGAAATGGGTGACTCACCCAAAGATGC
TTCATATCTCATAGAAAGCTCTGCGAATGATAATTCTCCTCCAAACTTTC
CAGCTTCGGATATGAATGAGAGTTATGAAGTCAAGGAGGCTTTAAGAGTG
CAAATGGAAGTGCAAAGTAAATTACATTTGCAAGTTGAGGCTGAGAAGCA
CTTGCAAATTCGCCAGAATGCACAACAAAGATATTTAGCTATGCTTGAGA
GAGCTTGCAAAATACTTACTGATCAAATTCTCGGAGGTGCAGTTGTTGAC
GCAGACAGTGAAAAATGTAAGGGATTAGGGACTAAAATGCCAAGAAGTTA
CATTCTTGACTCACTTGGCTTTTATACCTCACAATCTGTTGTGGTAGCCG
AAGTGCAATGCCC
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