FC923735

Overview
NameFC923735
Unique NameFC923735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923735 vs. ExPASy Swiss-Prot
Match: DHBB_BACSU (Isochorismatase OS=Bacillus subtilis GN=dhbB PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 55/171 (32.16%), Postives = 84/171 (49.12%), Query Frame = 1
Query:  202 PNPKSSVLLVIDMQNHF----SSIAKPILD---NTLATVQLCRRASIPVFFTRHC-HKSPADYGMLGEWWNGDL---VYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFLRGFRVFFSTDATATSDLELHEATL 681
            P+P  +VLL+ DMQN+F    ++ A P+ +   N       C +  IPV +T     ++P D  +L ++W   L    Y+     EL PE        D V+ K  YSAF  T L E +   G +++I+ G+  ++ C  TA +AF+   + FF  DA A   LE H+  L
Sbjct:   26 PDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPE------DDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMAL 190          
BLAST of FC923735 vs. ExPASy Swiss-Prot
Match: ENTB_SHIFL (Isochorismatase OS=Shigella flexneri GN=entB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 51/167 (30.54%), Postives = 83/167 (49.70%), Query Frame = 1
Query:  208 PKSSVLLVIDMQNHFSS-------IAKPILDNTLATVQLCRRASIPVFFTRHC-HKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADE-VIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFLRGFRVFFSTDATATSDLELHEATL 681
            P+ + LL+ DMQ++F S       + + ++ N  A    C++ +IPV++T     +S  D  +L + W   L    T   E    +  L   AD+ V+ K  YSAF  + L++ L   G  ++I+ GV  ++ C TTA DAF+R  + F   DA A    + H  +L
Sbjct:   28 PQRAALLIHDMQDYFVSFWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGL----TRSPEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALADFSRDEHLMSL 190          
BLAST of FC923735 vs. ExPASy Swiss-Prot
Match: ENTB_ECOLI (Isochorismatase OS=Escherichia coli (strain K12) GN=entB PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 51/167 (30.54%), Postives = 83/167 (49.70%), Query Frame = 1
Query:  208 PKSSVLLVIDMQNHFSS-------IAKPILDNTLATVQLCRRASIPVFFTRHC-HKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADE-VIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFLRGFRVFFSTDATATSDLELHEATL 681
            P+ + LL+ DMQ++F S       + + ++ N  A    C++ +IPV++T     +S  D  +L + W   L    T   E    +  L   AD+ V+ K  YSAF  + L++ L   G  ++I+ GV  ++ C TTA DAF+R  + F   DA A    + H  +L
Sbjct:   28 PQRAALLIHDMQDYFVSFWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGL----TRSPEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALADFSRDEHLMSL 190          
BLAST of FC923735 vs. ExPASy Swiss-Prot
Match: ENTB_ECO57 (Isochorismatase OS=Escherichia coli O157:H7 GN=entB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 51/167 (30.54%), Postives = 83/167 (49.70%), Query Frame = 1
Query:  208 PKSSVLLVIDMQNHFSS-------IAKPILDNTLATVQLCRRASIPVFFTRHC-HKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADE-VIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFLRGFRVFFSTDATATSDLELHEATL 681
            P+ + LL+ DMQ++F S       + + ++ N  A    C++ +IPV++T     +S  D  +L + W   L    T   E    +  L   AD+ V+ K  YSAF  + L++ L   G  ++I+ GV  ++ C TTA DAF+R  + F   DA A    + H  +L
Sbjct:   28 PQRAALLIHDMQDYFVSFWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGL----TRSPEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALADFSRDEHLMSL 190          
The following BLAST results are available for this feature:
BLAST of FC923735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DHBB_BACSU1.727e-1332.16Isochorismatase OS=Bacillus subtilis GN=dhbB PE=1 ... [more]
ENTB_SHIFL1.910e-1230.54Isochorismatase OS=Shigella flexneri GN=entB PE=3 ... [more]
ENTB_ECOLI1.910e-1230.54Isochorismatase OS=Escherichia coli (strain K12) G... [more]
ENTB_ECO571.910e-1230.54Isochorismatase OS=Escherichia coli O157:H7 GN=ent... [more]
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Properties
Property NameValue
Genbank descriptionC31708D05EF StrClemenN Citrus clementina cDNA clone C31708D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923735 ID=FC923735; Name=FC923735; organism=Citrus clementina; type=EST; length=681bp
TGATTGAATTTACCCTCGTCTCCTAGAACCACCTAGAAACTCTCGTATTG
TTAATACACTTATGCTCATGTAATTTCAACATTTAAGATCCCATACGGCC
ATACACCAGCAGAAATAATGTCTCTGAGAAGTCAAATCCAACAAGAAATG
GCGACATCAAAGTGTTCATCGTACCAGAAATACGAGATCAGAAAGAGAAA
CCCAAATCCCAAATCCTCTGTTTTATTAGTCATTGACATGCAAAACCACT
TTTCCTCCATAGCCAAACCCATACTCGACAACACTCTCGCCACCGTCCAG
CTCTGCCGACGAGCCTCCATCCCCGTTTTCTTCACGCGCCACTGCCACAA
GTCCCCCGCTGACTACGGCATGCTCGGCGAGTGGTGGAACGGCGATCTGG
TCTACGACGGCACCGCCGACGCCGAGCTCTTGCCTGAGATCAAAGGGCTG
GTGGCGGGTGCGGACGAGGTCATAGAGAAGAATACTTACAGCGCGTTTGG
TAACACGCGGCTGCAGGAGCGGTTGGTGGGGATGGGGGTGGAGGAAGTGA
TCGTGTGTGGTGTTATGACGAACTTGTGCTGCGAAACGACAGCGCGGGAC
GCGTTTTTGAGAGGGTTTAGGGTGTTCTTCTCGACGGATGCGACTGCCAC
GTCAGATTTGGAGCTGCACGAGGCGACGTTG
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