FC923740

Overview
NameFC923740
Unique NameFC923740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923740 vs. ExPASy Swiss-Prot
Match: UCHL3_BOVIN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.291e-39
Identity = 84/195 (43.08%), Postives = 124/195 (63.59%), Query Frame = 2
Query:  137 DVYGLDDELLAMVPQPVLAVLFLYPLTTQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLKTSCIA 697
            DVYG+D ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + +A++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDGRK  PI+HG            +V K  ++++P+ L+ + IA
Sbjct:   33 DVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESASMSPEERARYLENYDAIRVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIA 226          
BLAST of FC923740 vs. ExPASy Swiss-Prot
Match: UCHL3_HUMAN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Homo sapiens GN=UCHL3 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.575e-39
Identity = 83/195 (42.56%), Postives = 123/195 (63.08%), Query Frame = 2
Query:  137 DVYGLDDELLAMVPQPVLAVLFLYPLTTQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLKTSCIA 697
            DVYG+D ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDGRK  PI+HG            +V K  ++++P+ L+ + IA
Sbjct:   33 DVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIA 226          
BLAST of FC923740 vs. ExPASy Swiss-Prot
Match: UCHL3_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Mus musculus GN=Uchl3 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.250e-38
Identity = 83/195 (42.56%), Postives = 123/195 (63.08%), Query Frame = 2
Query:  137 DVYGLDDELLAMVPQPVLAVLFLYPLTTQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLKTSCIA 697
            DVYG++ ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + + ++ P+ERA FLEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDGRK  PI+HG            +V K  ++++P+ L+ + IA
Sbjct:   33 DVYGMEPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERAKFLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGKTSDETLLEDAIEVCKKFMERDPDELRFNAIA 226          
BLAST of FC923740 vs. ExPASy Swiss-Prot
Match: UCHL3_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Sus scrofa GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.786e-38
Identity = 83/195 (42.56%), Postives = 124/195 (63.59%), Query Frame = 2
Query:  137 DVYGLDDELLAMVPQPVLAVLFLYPLTTQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLKTSCIA 697
            DVYG+D ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N  +++ F++ S   KF + +A++ P ERA +LE+   + V H  +A  G TEA    + V+ HFI    VDG LYELDGRK  PI+HG            +V K  ++++P+ L+ + IA
Sbjct:   33 DVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTPSVYFMKQTISNACGTIGLIHAIANNKNKMHFESGSTLKKFLEESASMSPDERARYLESYDAIPVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIA 226          
BLAST of FC923740 vs. ExPASy Swiss-Prot
Match: UCHL3_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Rattus norvegicus GN=Uchl3 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.806e-37
Identity = 82/195 (42.05%), Postives = 121/195 (62.05%), Query Frame = 2
Query:  137 DVYGLDDELLAMVPQPVLAVLFLYPLTTQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLKTSCIA 697
            DVYG++ ELL+MVP+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + +  + P+ERA  LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDGRK  PI+HG            +V K  ++++P+ L+ + IA
Sbjct:   33 DVYGMEPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSALKKFLEESVAMSPEERARHLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGKTSDETLLEDAIEVCKKFMERDPDELRFNAIA 226          
BLAST of FC923740 vs. ExPASy Swiss-Prot
Match: UCHL4_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L4 OS=Mus musculus GN=Uchl4 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.809e-36
Identity = 80/198 (40.40%), Postives = 122/198 (61.62%), Query Frame = 2
Query:  137 DVYGLDDELLAMVPQPVLAVLFLYPLTTQ-----SEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIG---LLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLKTSCIA 697
            DVYG++ ELL+++P+PV AVL L+P+T +     +EEE +++   + + + +VYFMKQT+ NACGTIG   L+HA+ N   ++ F++ S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            KV K  ++++P+ L+ + IA
Sbjct:   33 DVYGMESELLSIIPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQ-DVTSSVYFMKQTISNACGTIGTIGLIHAIANNKDKVHFESGSTLKKFLEESVSMSPEERAKYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGWKPFPINHGKTSDETLLEDVIKVCKKFMERDPDELRFNAIA 229          
BLAST of FC923740 vs. ExPASy Swiss-Prot
Match: UCHL1_HORSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Equus caballus GN=UCHL1 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.809e-36
Identity = 78/189 (41.27%), Postives = 106/189 (56.08%), Query Frame = 2
Query:  137 DVYGLDDELLAMVPQPVLAVLFLYPLTTQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLKTSCIA 697
            DV GL++E L  VP P  A+L L+PLT Q E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDGR   P++HG            KV +   ++    ++ S +A
Sbjct:   30 DVLGLEEETLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDLLLQDAAKVCREFTEREQGEVRFSAVA 218          
BLAST of FC923740 vs. ExPASy Swiss-Prot
Match: UCHL1_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Rattus norvegicus GN=Uchl1 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 78/189 (41.27%), Postives = 106/189 (56.08%), Query Frame = 2
Query:  137 DVYGLDDELLAMVPQPVLAVLFLYPLTTQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLKTSCIA 697
            DV GL++E L  VP P  A+L L+PLT Q E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDGR   P++HG            KV +   ++    ++ S +A
Sbjct:   30 DVLGLEEETLGSVPSPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVA 218          
BLAST of FC923740 vs. ExPASy Swiss-Prot
Match: UCHL1_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Sus scrofa GN=UCHL1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 78/189 (41.27%), Postives = 106/189 (56.08%), Query Frame = 2
Query:  137 DVYGLDDELLAMVPQPVLAVLFLYPLTTQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLKTSCIA 697
            DV GL++E L  VP P  A+L L+PLT Q E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDGR   P++HG            KV +   ++    ++ S +A
Sbjct:   30 DVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVA 218          
BLAST of FC923740 vs. ExPASy Swiss-Prot
Match: UCHL1_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Mus musculus GN=Uchl1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 78/189 (41.27%), Postives = 106/189 (56.08%), Query Frame = 2
Query:  137 DVYGLDDELLAMVPQPVLAVLFLYPLTTQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLKTSCIA 697
            DV GL++E L  VP P  A+L L+PLT Q E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDGR   P++HG            KV +   ++    ++ S +A
Sbjct:   30 DVLGLEEETLGSVPSPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVA 218          
The following BLAST results are available for this feature:
BLAST of FC923740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
UCHL3_BOVIN3.291e-3943.08Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_HUMAN9.575e-3942.56Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_MOUSE1.250e-3842.56Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_PIG2.786e-3842.56Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_RAT1.806e-3742.05Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL4_MOUSE5.809e-3640.40Ubiquitin carboxyl-terminal hydrolase isozyme L4 O... [more]
UCHL1_HORSE5.809e-3641.27Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_RAT7.586e-3641.27Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_PIG7.586e-3641.27Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_MOUSE7.586e-3641.27Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]

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Properties
Property NameValue
Genbank descriptionC31708D10EF StrClemenN Citrus clementina cDNA clone C31708D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923740 ID=FC923740; Name=FC923740; organism=Citrus clementina; type=EST; length=700bp
GGAAAACAAAATGGCCGCATAGAGATAGAGGGTTATTCTGTTTGTGAAGA
GTATTCTTAGTTTAGTTTACTTCATATTTTTTATTTTGTAGTTCCTTTGG
GGCCTTGGTCTTCCAGCTGAGGAGGCAGAGTGCTATGATGTGTATGGCTT
GGATGATGAGCTCTTGGCAATGGTTCCGCAACCTGTTCTTGCCGTGCTGT
TTCTTTATCCCTTAACTACACAGAGTGAAGAAGAAAGAAGGTTGCAGGAC
AATGACAAAAAGGAATTTAGCAAGAATGTTTATTTCATGAAGCAAACTGT
TGGAAATGCTTGTGGAACAATTGGACTTCTTCATGCTGTTGGGAACGTCA
CTTCGGAAATCAAGTTTCAAGCTGATTCATTCTTCGATAAATTTTACAAG
TCCACGGCGAACTTGGATCCACAAGAGCGTGCAGCATTTCTTGAGAATGA
TAAGGAAATGGAAGTTGCTCATTCGGTAGCAGCTTCAGCTGGTGACACAG
AGGCTACCGATGACGTGAATGATCATTTTATCTGCTTCACCTGTGTGGAT
GGGGAACTTTATGAACTTGATGGAAGGAAGTCGGGGCCAATATCTCATGG
TGCTTCGTCTCCAAGCAGCTTATTGTTGGATGCAGCTAAAGTGATAAAGG
GCATGATCCAGAAAAATCCTGAATCACTGAAAACTTCATGTATTGCCTTT
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