FC923750

Overview
NameFC923750
Unique NameFC923750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923750 vs. ExPASy Swiss-Prot
Match: CC130_BOVIN (Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.044e-54
Identity = 109/201 (54.23%), Postives = 137/201 (68.16%), Query Frame = 3
Query:  138 NFYYPPKWTPNQ-GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLS-DPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASKKL 734
            N YYPP + P + GSLN++H  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGAQRK E +D+ED E +     E++ KL  D  +RLEH EAD    K+A P L  IQ  +   + DD+ALN  LR + R +KK + EEE   + L
Sbjct:    8 NKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMEDNEQVLTTEHEKKQKLEMDAMFRLEHGEADRSTLKKALPTLSHIQE-AQSAWKDDFALNSMLRKRFREKKKAMQEEEERDQAL 207          
BLAST of FC923750 vs. ExPASy Swiss-Prot
Match: CC130_HUMAN (Coiled-coil domain-containing protein 130 OS=Homo sapiens GN=CCDC130 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.326e-54
Identity = 108/201 (53.73%), Postives = 137/201 (68.16%), Query Frame = 3
Query:  138 NFYYPPKWTPNQ-GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASKKL 734
            N YYPP + P + GSLN++H  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGAQRK E +D+ D E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +   + DD+ALN  LR + R +KK + EEE   + L
Sbjct:    8 NKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMADNEQVLTTEHEKKQKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQSAWKDDFALNSMLRRRFREKKKAIQEEEERDQAL 207          
BLAST of FC923750 vs. ExPASy Swiss-Prot
Match: CC130_RAT (Coiled-coil domain-containing protein 130 OS=Rattus norvegicus GN=Ccdc130 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.967e-54
Identity = 108/204 (52.94%), Postives = 137/204 (67.16%), Query Frame = 3
Query:  129 RADNFYYPPKWTPNQ-GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASKKL 734
            +  N YYPP + P + GSLN++H  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +   + DD+ALN  LR   R +KK + EEE   + L
Sbjct:    5 KGQNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQNAWKDDFALNSMLRRHFREKKKAMQEEEEKDQAL 207          
BLAST of FC923750 vs. ExPASy Swiss-Prot
Match: CC130_MOUSE (Coiled-coil domain-containing protein 130 OS=Mus musculus GN=Ccdc130 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.181e-54
Identity = 107/204 (52.45%), Postives = 137/204 (67.16%), Query Frame = 3
Query:  129 RADNFYYPPKWTPNQ-GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASKKL 734
            +  N YYPP + P + GSLN++H  H LRERARKL QGIL+IRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +   + DD+ALN  LR   R +KK + EEE   + L
Sbjct:    5 KGQNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILVIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQNAWKDDFALNSMLRRHFREKKKAMQEEEEKDQAL 207          
BLAST of FC923750 vs. ExPASy Swiss-Prot
Match: CC130_XENLA (Coiled-coil domain-containing protein 130 OS=Xenopus laevis GN=ccdc130 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.177e-52
Identity = 102/204 (50.00%), Postives = 137/204 (67.16%), Query Frame = 3
Query:  129 RADNFYYPPKWTP-NQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASKKL 734
            +  N YYPP + P   GSLN +   H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP +C+YVI+SGAQRK E +D++D E +     E++ +L +D  +RLEH   D  K + A P L ++Q +    + DD+A+N  LR+K R +KK++ EEE   + L
Sbjct:    5 KGTNKYYPPDFDPAKHGSLNGYRNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPASCDYVIVSGAQRKEERWDMQDNEQILTTEHEQKQRLETDSMFRLEHGVQDKAKLQRAAPSLSELQEVQSA-WKDDFAINSLLRSKFREEKKQIKEEEERDQAL 207          
BLAST of FC923750 vs. ExPASy Swiss-Prot
Match: CC130_DANRE (Coiled-coil domain-containing protein 130 homolog OS=Danio rerio GN=ccdc130 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.011e-49
Identity = 100/195 (51.28%), Postives = 132/195 (67.69%), Query Frame = 3
Query:  138 NFYYPPKWTP-NQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEE 716
            N +YPP + P   GS+N ++  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP  C+YVI+SGAQRK E +D+ + E +      E+ KL +D  Y+L+H   D +K + A P L ++Q    G + DD+ LN ALR K R++KK + EEE
Sbjct:    8 NKWYPPDFDPAKHGSINGYYKTHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPATCDYVIVSGAQRKEERWDMAENEQILTTERNEKEKLETDAMYKLDHGGKDKEKLRAAIPSLNELQEHQSG-WKDDFQLNSALRRKFRTEKKVIAEEE 201          
BLAST of FC923750 vs. ExPASy Swiss-Prot
Match: CC130_DICDI (Coiled-coil domain-containing protein 130 homolog OS=Dictyostelium discoideum GN=DDB_G0281599 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.367e-46
Identity = 94/222 (42.34%), Postives = 136/222 (61.26%), Query Frame = 3
Query:  117 LAAARADNFYYPPKWTPNQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPA--------------DEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASKKLGL 740
            +A  +A N YYPP W P++GS+N++ GQH LR+RARK+DQGILIIRFEMPF++WC GC   I  GVRFNAEKK V  Y+++ I+SF MK   C +Q  IQ DPKN +Y +ISG +++ E+F+ ED+   ELP+              +      +D   +LE+++ D++K K+   +L ++Q I   R  +DY L+  +R   R +KK    E    K  G+
Sbjct:    1 MAERKATNKYYPPDWDPSKGSINQYRGQHHLRDRARKIDQGILIIRFEMPFSVWCLGCECHIGMGVRFNAEKKTVDKYFTSNIYSFKMKCHQCSNQFEIQNDPKNTDYKLISGLKKRIEQFNPEDS---ELPSSFIIKYDDNNNNNNNNNNNDNNDTLLKLENKKLDIEKGKKESTQLEKLQEIMTNRTINDYQLSSIMRKSFREKKKEDQIELERQKSKGI 219          
BLAST of FC923750 vs. ExPASy Swiss-Prot
Match: CC130_DROME (Coiled-coil domain-containing protein 130 homolog OS=Drosophila melanogaster GN=CG15084 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.193e-46
Identity = 88/203 (43.35%), Postives = 127/203 (62.56%), Query Frame = 3
Query:  129 RADNFYYPPKWTPNQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFD-VEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASKKL 734
            +  N YYPP + P +G LNKF G HALRERARK+  GI+IIRFEMP+NIWC GC + I  GVR+NAEK +VG YY+T ++ F MK   C +   IQTDP N +YVI+SGA+R+   +D +++ + +    + ++    D  Y+LEHQ  D +   +A P L ++   +   + D Y  N  LRA+ R QKK +  ++   ++L
Sbjct:    5 KGQNKYYPPDYDPKKGGLNKFQGTHALRERARKIHLGIIIIRFEMPYNIWCDGCKNHIGMGVRYNAEKTKVGMYYTTPVFKFRMKCHLCDNHFEIQTDPGNLDYVILSGARRQENRWDPLQNEQVVPETKEVQKRLFDDAMYKLEHQAKDAKAGADARPVLQKLVERNMSVWDDSYMANSRLRAEFRQQKKEINGQQELDRQL 207          
BLAST of FC923750 vs. ExPASy Swiss-Prot
Match: CC130_CAEEL (Coiled-coil domain-containing protein 130 homolog OS=Caenorhabditis elegans GN=ZK1307.9 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.167e-43
Identity = 89/204 (43.63%), Postives = 124/204 (60.78%), Query Frame = 3
Query:  129 RADNFYYPPKWT-PNQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASKKL 734
            +  NFYYPP +      SLN +HG HALRERA+K+DQGIL+IRFEMPFNIWC GC++ +  GVR+NAEKK++G YY+T +  F MK   C +  VI+TDPKN +Y ++ G  R+   FD  D   +         KL +D  ++ EH+  D  K    E R+ +++ I + R  DD+  N  LRA+ R++KK + E  A    L
Sbjct:    5 KGQNFYYPPDFNYKTHKSLNGYHGTHALRERAKKIDQGILVIRFEMPFNIWCLGCHNHVGMGVRYNAEKKKIGMYYTTPLHEFRMKCHLCDNYYVIRTDPKNFDYELVEGCSRQELRFDPTDIAQIGAVDRGFTQKLAADAMFKKEHEAEDKDKAATEEGRVDKLEWIQE-RMRDDFTANSFLRAQFRNEKKSLNETRARDANL 207          
BLAST of FC923750 vs. ExPASy Swiss-Prot
Match: CWC16_SCHPO (Protein cwc16 OS=Schizosaccharomyces pombe GN=cwc16 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.883e-28
Identity = 64/171 (37.43%), Postives = 98/171 (57.31%), Query Frame = 3
Query:  222 RKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASKKL 734
            RK D+   +IRFEMPF +WC  C ++I +G RFNA KK++G+YY+TKIWSF++K   C + I + TDPKN EY++ SG +RK E  D+ +       A+ +    SD    LE Q    + +K     +  I   ++  +SD +  ++ LR + R +KK   ++EA    L
Sbjct:   14 RKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEYIVASGGRRKIEPQDINERPA---KAENDEKVPSDAIEALETQLTQQKSEKHNSSVINFIYEKNERLWSDPFVSSQRLRKQFRERKKIEKKQEAKDLSL 181          
The following BLAST results are available for this feature:
BLAST of FC923750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CC130_BOVIN1.044e-5454.23Coiled-coil domain-containing protein 130 OS=Bos t... [more]
CC130_HUMAN2.326e-5453.73Coiled-coil domain-containing protein 130 OS=Homo ... [more]
CC130_RAT3.967e-5452.94Coiled-coil domain-containing protein 130 OS=Rattu... [more]
CC130_MOUSE5.181e-5452.45Coiled-coil domain-containing protein 130 OS=Mus m... [more]
CC130_XENLA2.177e-5250.00Coiled-coil domain-containing protein 130 OS=Xenop... [more]
CC130_DANRE1.011e-4951.28Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_DICDI1.367e-4642.34Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_DROME5.193e-4643.35Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_CAEEL9.167e-4343.63Coiled-coil domain-containing protein 130 homolog ... [more]
CWC16_SCHPO4.883e-2837.43Protein cwc16 OS=Schizosaccharomyces pombe GN=cwc1... [more]

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Properties
Property NameValue
Genbank descriptionC31708E08EF StrClemenN Citrus clementina cDNA clone C31708E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923750 ID=FC923750; Name=FC923750; organism=Citrus clementina; type=EST; length=742bp
GAATTAAAGGTGCAGAAACTAGAGCCTTGAAAAAAAAATTCGGTGGTGTG
ATCATCGATTCGAAACCAACCAAACGGCGATCTTGATCGTGCTATCTAGA
AGAAGAAATGTCTTCTCTTGCAGCTGCTAGAGCAGATAATTTTTACTATC
CTCCAAAATGGACCCCAAATCAGGGTTCTTTGAACAAGTTTCATGGTCAA
CATGCTTTGAGGGAAAGAGCAAGAAAGTTAGATCAGGGAATTTTGATTAT
AAGGTTTGAGATGCCTTTCAATATATGGTGCGGTGGATGCAATTCTATGA
TTGCAAAGGGTGTTCGTTTCAATGCTGAAAAGAAGCAAGTGGGAAATTAT
TACTCTACAAAGATATGGAGTTTTACGATGAAGTCTCCTTGCTGCAAACA
TCAGATTGTTATCCAGACAGATCCAAAGAATTGTGAGTATGTAATTATTA
GTGGAGCTCAGCGAAAGACAGAGGAGTTTGACGTTGAGGATGCAGAGACT
CTTGAACTCCCTGCAGATGAGGAAAGGGGTAAGCTTTCGGATCCATTTTA
TCGTCTTGAGCACCAGGAAGCTGACCTGCAGAAGAAGAAAGAAGCTGAGC
CAAGACTGGTGCAAATTCAGAGAATATCTGATGGCAGGTTTTCAGACGAC
TATGCACTAAACAAGGCTCTCAGGGCCAAACTTAGATCTCAGAAGAAGAG
AGTCACCGAAGAGGAGGCTGCTTCAAAGAAATTAGGCCTTGG
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