FC923754

Overview
NameFC923754
Unique NameFC923754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923754 vs. ExPASy Swiss-Prot
Match: ENDUB_XENLA (Poly(U)-specific endoribonuclease-B OS=Xenopus laevis GN=endou-B PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.149e-44
Identity = 101/240 (42.08%), Postives = 139/240 (57.92%), Query Frame = 1
Query:   31 DLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAY------QKDDMAQGSLFSWLSDDVFR-KPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCF 726
            +LS+    LW+ D NR+  GKDY I    GK  Y      Q  D A   LF ++ ++  + K T++ F SLLDNY  + G  EVVT EE  E   F++ I  T  +K  H YL  K     +  DFK  + S+WF LY R  G+   S  FEHVFVGE K+   +E+ G HNW+QF L+E + N+DY+GY+  R+    PD + Q+L +QF W  ++K V ++ +GVSPEFE ALYT+ F
Sbjct:   11 ELSKLFNELWDADVNRMKAGKDYRISL-QGKAGYVPARSNQAKDSASYPLFQFVDEEKLKSKKTFATFISLLDNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAKPSQNDFKVQLYSIWFQLYSRAPGSRPDSCGFEHVFVGESKRG--KEMMGLHNWVQFYLQEKRKNIDYKGYV-ARQNKSRPDEDDQVLNLQFSWKEMVKPVGSSFIGVSPEFEFALYTIVF 246          
BLAST of FC923754 vs. ExPASy Swiss-Prot
Match: ENDUA_XENLA (Poly(U)-specific endoribonuclease-A OS=Xenopus laevis GN=endou-A PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.787e-44
Identity = 100/240 (41.67%), Postives = 138/240 (57.50%), Query Frame = 1
Query:   31 DLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAY------QKDDMAQGSLFSWLSDDVFR-KPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCF 726
            +LS+    LW+ D NR+  GKDY I    GK  Y      Q  D A   LF ++ ++  + + T++ F SLLDNY  + G  EVVT EE  E   F++ I  T  +K  H YL  K        DFK  + ++WF LY R  G+   S  FEHVFVGE K+   QE+ G HNW+QF L+E + N+DY+GY+  R+    PD + Q+L +QF W  ++K V ++ +GVSPEFE ALYT+ F
Sbjct:   11 ELSKLFNELWDADQNRMKSGKDYRISL-QGKAGYVPAGSNQARDSASFPLFQFVDEEKLKSRKTFATFISLLDNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAKPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHVFVGESKRG--QEMMGLHNWVQFYLQEKRKNIDYKGYV-ARQNKSRPDEDDQVLNLQFNWKEMVKPVGSSFIGVSPEFEFALYTIVF 246          
BLAST of FC923754 vs. ExPASy Swiss-Prot
Match: ENDOU_XENTR (Poly(U)-specific endoribonuclease OS=Xenopus tropicalis GN=endou PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.819e-43
Identity = 98/240 (40.83%), Postives = 137/240 (57.08%), Query Frame = 1
Query:   31 DLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAY------QKDDMAQGSLFSWLSDDVFR-KPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCF 726
            +LS+    LW+ D NR+  GKDY I    GK  Y      Q  D A   LF ++ ++  R + T++ F SLLDNY  + G  EVVT EE  E   F++ I  T  +K  H YL  K     +  DFK  + ++WF LY R  G    S  FEHVFVGE K+   +E+ G HNW+QF L+E +  +DY+GY+  R+    PD + Q+L +QF W  ++K + ++ +GVSPEFE ALYT+ F
Sbjct:   12 ELSKLFNELWDADENRMKAGKDYRISL-QGKAGYVPAGSNQARDSASYPLFQFVDEEKLRSRKTFATFISLLDNYEMDTGVAEVVTPEEIAENNTFLDAILETKVMKIAHDYLVRKNQAKPSRNDFKAQLYTIWFQLYSRAPGQGPDSCGFEHVFVGESKRG--KEIMGLHNWVQFYLQEKRKTIDYKGYV-GRQNKSRPDHDDQVLNLQFSWKEMVKPIGSSFIGVSPEFEFALYTVVF 247          
BLAST of FC923754 vs. ExPASy Swiss-Prot
Match: PP11_HUMAN (Placental protein 11 OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.882e-40
Identity = 92/241 (38.17%), Postives = 142/241 (58.92%), Query Frame = 1
Query:   13 SEEELADLSQGCYRLWELDSNRLVPGKDYEID---CGDGKKAYQKDDMAQGSLFSWLSDDVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCF 726
            ++EE+  +S+  YR    D+N+    +D  ++   C    +   + D     LF+++++ +F KPTY+ F +LL+NY    GH E  +++E  EQ AF+ EI +TA +K L+ +L  +    G+ Q+F   + ++WF LY RG     SS FEHVF GE+K+    +V+GFHNW++F LEE +G VDY  +I+       PD    +L +QF W+G  K V +  +G SPEFE ALY+LCF
Sbjct:   96 TKEEIQSISEKIYRA---DTNK-AQKEDIVLNSQNCISPSETRNQVDRCPKPLFTYVNEKLFSKPTYAAFINLLNNYQRATGHGEHFSAQELAEQDAFLREIMKTAVMKELYSFLHHQNRY-GSEQEFVDDLKNMWFGLYSRGNEEGDSSGFEHVFSGEVKKG---KVTGFHNWIRFYLEEKEGLVDYYSHIYDGPWDSYPD----VLAMQFNWDGYYKEVGSAFIGSSPEFEFALYSLCF 324          
The following BLAST results are available for this feature:
BLAST of FC923754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ENDUB_XENLA2.149e-4442.08Poly(U)-specific endoribonuclease-B OS=Xenopus lae... [more]
ENDUA_XENLA4.787e-4441.67Poly(U)-specific endoribonuclease-A OS=Xenopus lae... [more]
ENDOU_XENTR1.819e-4340.83Poly(U)-specific endoribonuclease OS=Xenopus tropi... [more]
PP11_HUMAN1.882e-4038.17Placental protein 11 OS=Homo sapiens PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC31708E12EF StrClemenN Citrus clementina cDNA clone C31708E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923754 ID=FC923754; Name=FC923754; organism=Citrus clementina; type=EST; length=732bp
ACCTTAGAACCCTCAGAAGAAGAGCTTGCTGACCTGTCACAAGGCTGCTA
TAGGCTCTGGGAACTTGATTCAAATCGTCTGGTACCTGGCAAGGACTATG
AGATTGACTGTGGTGACGGGAAGAAGGCTTACCAAAAGGATGATATGGCA
CAAGGAAGCCTGTTCAGTTGGCTTAGTGATGACGTATTCAGGAAGCCTAC
TTATTCTCGGTTCTGTTCACTTTTAGATAATTACAATCCAAATGCAGGAC
ACAAAGAAGTTGTCACATCTGAAGAGAAGCAGGAGCAAGCTGCTTTCATT
GAAGAAATCAGTAGAACTGCACCAATTAAATATCTTCATAAGTATCTCTC
AGCCAAGGGCATTGTATCTGGGAATTATCAAGATTTTAAAAGAACAATCA
GCAGTCTCTGGTTTGATCTTTATGGCCGAGGTGGTACATCCAGTTGCTCT
TCTGCTTTTGAGCATGTTTTTGTTGGGGAAATCAAACAAGCTGGTGAACA
AGAAGTTTCTGGCTTCCATAACTGGCTTCAGTTTTGCCTTGAAGAAGCAA
AAGGAAATGTTGATTACCAAGGATATATATTCCCCCGACGTCGCGGACAA
GTCCCGGACTCTGAAACGCAGTTGCTAACAGTTCAGTTTGAATGGAACGG
CATTCTCAAATCTGTATCAACCACTTTGGTTGGAGTGAGTCCGGAGTTTG
AAATTGCTTTGTACACCCTATGTTTCTTCGTT
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