FC923761

Overview
NameFC923761
Unique NameFC923761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_PETHY (Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.563e-79
Identity = 154/165 (93.33%), Postives = 155/165 (93.94%), Query Frame = 2
Query:    2 GIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRLEGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSKKKGVRAISETYEI 496
            GIEMMIEIILRNRRIPYGYN YLNEVKKMRSLL NRTNTNTLIESVKIKSVYQSAS IAQDISFQ RNKTRSFRSIFSKIVKDIPLVM KGVEGIRICCSGRLEGAEIARTECGKYGKTS NVF+QKIDYA AEVSTRYGI GVKVWISYSKKK  RAISETYEI
Sbjct:  398 GIEMMIEIILRNRRIPYGYNYYLNEVKKMRSLLYNRTNTNTLIESVKIKSVYQSASPIAQDISFQPRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRLEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYSKKKKGRAISETYEI 562          
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_MAIZE (Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.984e-75
Identity = 147/165 (89.09%), Postives = 151/165 (91.52%), Query Frame = 2
Query:    2 GIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRLEGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSKKKGVRAISETYEI 496
            GIEMMIEIILR RRIPYGYNSYLNEV+KMRS LSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRN   SFRSIFSKIVKDIPL+M KGVEGIRICCSGRL GAEIARTECGKYGKTSCNVF+QKIDYA AEVSTR GI GVKV ISYS+ K  RAISETYEI
Sbjct:  395 GIEMMIEIILRKRRIPYGYNSYLNEVQKMRSFLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNNPISFRSIFSKIVKDIPLIMPKGVEGIRICCSGRLGGAEIARTECGKYGKTSCNVFNQKIDYAPAEVSTRDGISGVKVRISYSQNKKGRAISETYEI 559          
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_ORYSJ (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.361e-73
Identity = 144/165 (87.27%), Postives = 149/165 (90.30%), Query Frame = 2
Query:    2 GIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRLEGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSKKKGVRAISETYEI 496
            GIEMMIEIILR R IPYGYNSYLNEV+KMRS LSNRTNTNTLIESVKIKSVYQSASLIAQDISFQL N   SFRSIFS+IVKDIPL+M KGVEGIRICCSGRL GAEIARTECGKYGKTSCNVF+QKIDYA AEVSTR GI GVKV ISYS+ K  RAISETYEI
Sbjct:  374 GIEMMIEIILRKRIIPYGYNSYLNEVQKMRSFLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLGNNPISFRSIFSQIVKDIPLIMPKGVEGIRICCSGRLGGAEIARTECGKYGKTSCNVFNQKIDYALAEVSTRNGISGVKVRISYSQNKKGRAISETYEI 538          
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_OENBE (Ribosomal protein S3, mitochondrial OS=Oenothera bertiana GN=RPS3 PE=3 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 2.417e-72
Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 2
Query:    2 GIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRLEGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSK 457
            GIE+MIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRT TNT+IESVKIKSVYQSAS IAQDISFQ RNK RSFRSIFS+IVKDIPLVM KGVEGIRICCSGR +GAEIARTECGKYGKTS NVF+QKIDYA AEVSTRYGILGVKVWISYSK
Sbjct:  399 GIEIMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTKTNTIIESVKIKSVYQSASPIAQDISFQPRNKRRSFRSIFSQIVKDIPLVMKKGVEGIRICCSGRSKGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKVWISYSK 550          
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_ARATH (Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 1.202e-63
Identity = 131/165 (79.39%), Postives = 141/165 (85.45%), Query Frame = 2
Query:    5 IEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRL-EGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSKKKGVRAISETYEI 496
            I+MMIEIILR R IPY YNSY  EVKKMRS LSNRTNT TLIESVKIKSVYQSASLIAQDISFQL+NK RSF SIF+KIVK+IP    KGVEGIRIC SGRL + AE A+T+C K+ KTSCNVF+ KIDYA  EV TRYGILGVKVWISYS+KKG RAISETYEI
Sbjct:  396 IDMMIEIILRKRGIPYRYNSYFYEVKKMRSFLSNRTNTKTLIESVKIKSVYQSASLIAQDISFQLKNKRRSFHSIFAKIVKEIP----KGVEGIRICFSGRLKDAAEKAQTKCYKHRKTSCNVFNHKIDYAPVEVFTRYGILGVKVWISYSQKKGRRAISETYEI 556          
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_BRANA (Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.794e-63
Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 2
Query:    5 IEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRL-EGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSKKKGVRAISETYEI 496
            I+MMIEIILR R IPYGYNSY NEV+KMRS LSNRTNT TLIESVKIKSVYQSASLIAQDISFQL+NK RS  SIF+KIVK+IP    K VEGIRIC SGRL + AE A+T+C K+ KTS NVF+QKIDYA AEVSTRYGI GVKVWISYS+KKG RAISETYEI
Sbjct:  395 IDMMIEIILRKRGIPYGYNSYFNEVQKMRSFLSNRTNTKTLIESVKIKSVYQSASLIAQDISFQLKNKRRSTHSIFAKIVKEIP----KRVEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYSQKKGGRAISETYEI 555          
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RM16_ARATH (60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana GN=RPL16 PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.600e-50
Identity = 100/122 (81.97%), Postives = 101/122 (82.79%), Query Frame = 3
Query:  366 MYFTRKSIMLLRKYLLVTES*VSKCGFHIVKKKEYVLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPIYGKP 731
            MY T KSIMLL KYLLVTES VSKCGFHIVKKK  VLYPKRTKYSKYRKGRCSRGCKPDGT+LGFGRYGIKS KAG LSY           G FHRAMSGQFRRNGKIWVRVFADLPI GKP
Sbjct:    1 MYLTIKSIMLLWKYLLVTESQVSKCGFHIVKKKGDVLYPKRTKYSKYRKGRCSRGCKPDGTKLGFGRYGIKSCKAGCLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVFADLPITGKP 122          
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RM16_ORYSJ (60S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL16 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.152e-48
Identity = 98/128 (76.56%), Postives = 101/128 (78.91%), Query Frame = 3
Query:  348 MEKLLVMYFTRKSIMLLRKYLLVTES*VSKCGFHIVKKKEYVLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPIYGKP 731
            MEK LVMY TRKSIMLLRKY LVTE  VSKCG HIVK +  VLYPKRTKYSKY K RCSRGC+PDGTQLGFGRYG KS +AGRLSY           GQFHRAMSGQFRRN KIWVRV ADLPI GKP
Sbjct:    1 MEKHLVMYLTRKSIMLLRKYPLVTEFQVSKCGSHIVKIRRDVLYPKRTKYSKYSKCRCSRGCEPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRATIGQFHRAMSGQFRRNCKIWVRVLADLPITGKP 128          
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RM16_PETHY (60S ribosomal protein L16, mitochondrial OS=Petunia hybrida GN=RPL16 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.336e-46
Identity = 92/114 (80.70%), Postives = 94/114 (82.46%), Query Frame = 3
Query:  390 MLLRKYLLVTES*VSKCGFHIVKKKEYVLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPIYGKP 731
            MLLRKYLLVTES VSKCGF IVKKK  VLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYG KS +AGRLSY           G FHRAMSGQFRRNGKIWVRV AD+PI GKP
Sbjct:    1 MLLRKYLLVTESQVSKCGFLIVKKKRDVLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVLADIPITGKP 114          
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RM16_MAIZE (60S ribosomal protein L16, mitochondrial OS=Zea mays GN=RPL16 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.336e-46
Identity = 97/128 (75.78%), Postives = 100/128 (78.12%), Query Frame = 3
Query:  348 MEKLLVMYFTRKSIMLLRKYLLVTES*VSKCGFHIVKKKEYVLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPIYGKP 731
            MEK LVMY TRKSIMLLRKYLLVTE  VSKCG HIVK +  VLYPKRTKYSKY K RCSRG +PDGTQLGFGRYG KS +AGRLSY           GQF RAMSGQFRRN KIWVRV ADLPI GKP
Sbjct:    1 MEKHLVMYLTRKSIMLLRKYLLVTEFQVSKCGSHIVKIRRDVLYPKRTKYSKYSKCRCSRGREPDGTQLGFGRYGTKSSRAGRLSYRAIEAARRATIGQFRRAMSGQFRRNCKIWVRVLADLPITGKP 128          
The following BLAST results are available for this feature:
BLAST of FC923761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RT03_PETHY1.563e-7993.33Ribosomal protein S3, mitochondrial OS=Petunia hyb... [more]
RT03_MAIZE3.984e-7589.09Ribosomal protein S3, mitochondrial OS=Zea mays GN... [more]
RT03_ORYSJ6.361e-7387.27Ribosomal protein S3, mitochondrial OS=Oryza sativ... [more]
RT03_OENBE2.417e-7291.45Ribosomal protein S3, mitochondrial OS=Oenothera b... [more]
RT03_ARATH1.202e-6379.39Ribosomal protein S3, mitochondrial OS=Arabidopsis... [more]
RT03_BRANA7.794e-6379.39Ribosomal protein S3, mitochondrial OS=Brassica na... [more]
RM16_ARATH2.600e-5081.9760S ribosomal protein L16, mitochondrial OS=Arabid... [more]
RM16_ORYSJ4.152e-4876.5660S ribosomal protein L16, mitochondrial OS=Oryza ... [more]
RM16_PETHY1.336e-4680.7060S ribosomal protein L16, mitochondrial OS=Petuni... [more]
RM16_MAIZE1.336e-4675.7860S ribosomal protein L16, mitochondrial OS=Zea ma... [more]

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Properties
Property NameValue
Genbank descriptionC31708F07EF StrClemenN Citrus clementina cDNA clone C31708F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923761 ID=FC923761; Name=FC923761; organism=Citrus clementina; type=EST; length=731bp
GGGAATAGAGATGATGATAGAGATCATACTGAGAAACAGAAGAATTCCGT
ACGGGTACAACTCTTATTTAAACGAAGTCAAAAAAATGCGATCTTTGTTG
TCTAATAGAACAAACACTAATACCTTAATTGAGTCGGTAAAGATCAAATC
TGTTTATCAAAGTGCTTCCCTGATTGCTCAAGACATCTCTTTTCAACTGA
GGAACAAAACAAGATCATTTCGTTCCATTTTTAGTAAAATAGTGAAGGAT
ATTCCATTAGTAATGAATAAAGGGGTTGAGGGGATCCGTATATGTTGTTC
AGGTCGATTAGAAGGCGCAGAAATCGCTAGAACTGAATGCGGAAAGTATG
GAAAAACTTCTTGTAATGTATTTCACCAGAAAATCGATTATGCTTCTGCG
GAAGTATCTACTCGTTACGGAATCTTAGGTGTCAAAGTGTGGATTTCATA
TAGTAAAAAAAAAGGAGTACGTGCTATATCCGAAACGTACGAAATATAGT
AAATATCGTAAAGGCAGATGTAGTAGGGGTTGCAAACCGGACGGTACACA
ACTTGGTTTTGGAAGATATGGCATTAAAAGTTATAAAGCTGGTCGTCTTT
CATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCAT
CGTGCTATGAGCGGACAATTCCGAAGAAATGGTAAGATATGGGTAAGAGT
TTTCGCGGATCTCCCTATTTACGGGAAACCT
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