FC923761
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_PETHY (Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 1.563e-79 Identity = 154/165 (93.33%), Postives = 155/165 (93.94%), Query Frame = 2 Query: 2 GIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRLEGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSKKKGVRAISETYEI 496 GIEMMIEIILRNRRIPYGYN YLNEVKKMRSLL NRTNTNTLIESVKIKSVYQSAS IAQDISFQ RNKTRSFRSIFSKIVKDIPLVM KGVEGIRICCSGRLEGAEIARTECGKYGKTS NVF+QKIDYA AEVSTRYGI GVKVWISYSKKK RAISETYEI Sbjct: 398 GIEMMIEIILRNRRIPYGYNYYLNEVKKMRSLLYNRTNTNTLIESVKIKSVYQSASPIAQDISFQPRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRLEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYSKKKKGRAISETYEI 562
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_MAIZE (Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 3.984e-75 Identity = 147/165 (89.09%), Postives = 151/165 (91.52%), Query Frame = 2 Query: 2 GIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRLEGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSKKKGVRAISETYEI 496 GIEMMIEIILR RRIPYGYNSYLNEV+KMRS LSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRN SFRSIFSKIVKDIPL+M KGVEGIRICCSGRL GAEIARTECGKYGKTSCNVF+QKIDYA AEVSTR GI GVKV ISYS+ K RAISETYEI Sbjct: 395 GIEMMIEIILRKRRIPYGYNSYLNEVQKMRSFLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNNPISFRSIFSKIVKDIPLIMPKGVEGIRICCSGRLGGAEIARTECGKYGKTSCNVFNQKIDYAPAEVSTRDGISGVKVRISYSQNKKGRAISETYEI 559
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_ORYSJ (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 6.361e-73 Identity = 144/165 (87.27%), Postives = 149/165 (90.30%), Query Frame = 2 Query: 2 GIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRLEGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSKKKGVRAISETYEI 496 GIEMMIEIILR R IPYGYNSYLNEV+KMRS LSNRTNTNTLIESVKIKSVYQSASLIAQDISFQL N SFRSIFS+IVKDIPL+M KGVEGIRICCSGRL GAEIARTECGKYGKTSCNVF+QKIDYA AEVSTR GI GVKV ISYS+ K RAISETYEI Sbjct: 374 GIEMMIEIILRKRIIPYGYNSYLNEVQKMRSFLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLGNNPISFRSIFSQIVKDIPLIMPKGVEGIRICCSGRLGGAEIARTECGKYGKTSCNVFNQKIDYALAEVSTRNGISGVKVRISYSQNKKGRAISETYEI 538
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_OENBE (Ribosomal protein S3, mitochondrial OS=Oenothera bertiana GN=RPS3 PE=3 SV=2) HSP 1 Score: 271.937 bits (694), Expect = 2.417e-72 Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 2 Query: 2 GIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRLEGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSK 457 GIE+MIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRT TNT+IESVKIKSVYQSAS IAQDISFQ RNK RSFRSIFS+IVKDIPLVM KGVEGIRICCSGR +GAEIARTECGKYGKTS NVF+QKIDYA AEVSTRYGILGVKVWISYSK Sbjct: 399 GIEIMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTKTNTIIESVKIKSVYQSASPIAQDISFQPRNKRRSFRSIFSQIVKDIPLVMKKGVEGIRICCSGRSKGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGILGVKVWISYSK 550
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_ARATH (Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3) HSP 1 Score: 243.047 bits (619), Expect = 1.202e-63 Identity = 131/165 (79.39%), Postives = 141/165 (85.45%), Query Frame = 2 Query: 5 IEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRL-EGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSKKKGVRAISETYEI 496 I+MMIEIILR R IPY YNSY EVKKMRS LSNRTNT TLIESVKIKSVYQSASLIAQDISFQL+NK RSF SIF+KIVK+IP KGVEGIRIC SGRL + AE A+T+C K+ KTSCNVF+ KIDYA EV TRYGILGVKVWISYS+KKG RAISETYEI Sbjct: 396 IDMMIEIILRKRGIPYRYNSYFYEVKKMRSFLSNRTNTKTLIESVKIKSVYQSASLIAQDISFQLKNKRRSFHSIFAKIVKEIP----KGVEGIRICFSGRLKDAAEKAQTKCYKHRKTSCNVFNHKIDYAPVEVFTRYGILGVKVWISYSQKKGRRAISETYEI 556
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RT03_BRANA (Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 7.794e-63 Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 2 Query: 5 IEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLRNKTRSFRSIFSKIVKDIPLVMNKGVEGIRICCSGRL-EGAEIARTECGKYGKTSCNVFHQKIDYASAEVSTRYGILGVKVWISYSKKKGVRAISETYEI 496 I+MMIEIILR R IPYGYNSY NEV+KMRS LSNRTNT TLIESVKIKSVYQSASLIAQDISFQL+NK RS SIF+KIVK+IP K VEGIRIC SGRL + AE A+T+C K+ KTS NVF+QKIDYA AEVSTRYGI GVKVWISYS+KKG RAISETYEI Sbjct: 395 IDMMIEIILRKRGIPYGYNSYFNEVQKMRSFLSNRTNTKTLIESVKIKSVYQSASLIAQDISFQLKNKRRSTHSIFAKIVKEIP----KRVEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYSQKKGGRAISETYEI 555
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RM16_ARATH (60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana GN=RPL16 PE=2 SV=3) HSP 1 Score: 198.749 bits (504), Expect = 2.600e-50 Identity = 100/122 (81.97%), Postives = 101/122 (82.79%), Query Frame = 3 Query: 366 MYFTRKSIMLLRKYLLVTES*VSKCGFHIVKKKEYVLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPIYGKP 731 MY T KSIMLL KYLLVTES VSKCGFHIVKKK VLYPKRTKYSKYRKGRCSRGCKPDGT+LGFGRYGIKS KAG LSY G FHRAMSGQFRRNGKIWVRVFADLPI GKP Sbjct: 1 MYLTIKSIMLLWKYLLVTESQVSKCGFHIVKKKGDVLYPKRTKYSKYRKGRCSRGCKPDGTKLGFGRYGIKSCKAGCLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVFADLPITGKP 122
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RM16_ORYSJ (60S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL16 PE=3 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 4.152e-48 Identity = 98/128 (76.56%), Postives = 101/128 (78.91%), Query Frame = 3 Query: 348 MEKLLVMYFTRKSIMLLRKYLLVTES*VSKCGFHIVKKKEYVLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPIYGKP 731 MEK LVMY TRKSIMLLRKY LVTE VSKCG HIVK + VLYPKRTKYSKY K RCSRGC+PDGTQLGFGRYG KS +AGRLSY GQFHRAMSGQFRRN KIWVRV ADLPI GKP Sbjct: 1 MEKHLVMYLTRKSIMLLRKYPLVTEFQVSKCGSHIVKIRRDVLYPKRTKYSKYSKCRCSRGCEPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRATIGQFHRAMSGQFRRNCKIWVRVLADLPITGKP 128
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RM16_PETHY (60S ribosomal protein L16, mitochondrial OS=Petunia hybrida GN=RPL16 PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.336e-46 Identity = 92/114 (80.70%), Postives = 94/114 (82.46%), Query Frame = 3 Query: 390 MLLRKYLLVTES*VSKCGFHIVKKKEYVLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPIYGKP 731 MLLRKYLLVTES VSKCGF IVKKK VLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYG KS +AGRLSY G FHRAMSGQFRRNGKIWVRV AD+PI GKP Sbjct: 1 MLLRKYLLVTESQVSKCGFLIVKKKRDVLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVLADIPITGKP 114
BLAST of FC923761 vs. ExPASy Swiss-Prot
Match: RM16_MAIZE (60S ribosomal protein L16, mitochondrial OS=Zea mays GN=RPL16 PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.336e-46 Identity = 97/128 (75.78%), Postives = 100/128 (78.12%), Query Frame = 3 Query: 348 MEKLLVMYFTRKSIMLLRKYLLVTES*VSKCGFHIVKKKEYVLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPIYGKP 731 MEK LVMY TRKSIMLLRKYLLVTE VSKCG HIVK + VLYPKRTKYSKY K RCSRG +PDGTQLGFGRYG KS +AGRLSY GQF RAMSGQFRRN KIWVRV ADLPI GKP Sbjct: 1 MEKHLVMYLTRKSIMLLRKYLLVTEFQVSKCGSHIVKIRRDVLYPKRTKYSKYSKCRCSRGREPDGTQLGFGRYGTKSSRAGRLSYRAIEAARRATIGQFRRAMSGQFRRNCKIWVRVLADLPITGKP 128 The following BLAST results are available for this feature:
BLAST of FC923761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923761 ID=FC923761; Name=FC923761; organism=Citrus clementina; type=EST; length=731bpback to top |