FC923762

Overview
NameFC923762
Unique NameFC923762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923762 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.060e-41
Identity = 103/224 (45.98%), Postives = 124/224 (55.36%), Query Frame = 2
Query:  128 WARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGG--------RTGATPE-----GHHXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGN-QYLDQYSTGNNNQQQHGVAQKGYVGDSVVPVQCELAKQDHHRHQQNFQ 757
            WA+ CDTCR+AACTVYC+AD AYLCS+CD++VH ANR+A RHERV VC+SCE+APAAF               EIHSANPLARRHQRVPILPIS   Y           T   PE     G          AASWLL +                       DE+L+LVDY+  + Q+ DQ    N  Q    V Q+ Y  D VVP+Q E++K   ++ QQNFQ
Sbjct:    8 WAQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG---------DEFLNLVDYSSSDKQFTDQ---SNQYQLDCNVPQRSYGEDGVVPLQIEVSK-GMYQEQQNFQ 218          
BLAST of FC923762 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.868e-41
Identity = 104/227 (45.81%), Postives = 120/227 (52.86%), Query Frame = 2
Query:   83 MMKEEXXXXXXXXXXWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGG--NQYLDQYSTGNNNQQQHGVAQKGYVGDSVVPVQCELAKQDHHRHQQNFQ 757
            M+KEE          WAR CDTCR+AACTVYC+AD AYLC+ CD+RVH ANRVA RHERV VC+SCE APAAF               EIHSANPLARRHQRVPILP+S +       A  E            ASWLL +                        EYLDLVDY+    NQ+ D       NQ  H   Q+ + GD VVP+Q E +     + QQNFQ
Sbjct:    1 MLKEESNESGT----WARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSM--APSETDADNDEDDREVASWLLPNPGKNIGNQNNGFLFGV--------EYLDLVDYSSSMDNQFED-------NQYTH--YQRSFGGDGVVPLQVEESTSHLQQSQQNFQ 204          
BLAST of FC923762 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.769e-39
Identity = 102/244 (41.80%), Postives = 124/244 (50.82%), Query Frame = 2
Query:   83 MMKEEXXXXXXXXXXWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGG---------RTGATPEGH--------HXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGNQYLDQYSTG--NNNQQQHGVAQKGYVGDSVVPVQCELAKQDHHRHQQNFQ 757
            M+K+E           AR CDTCR+ ACTVYC AD AYLC +CD++VH ANRVA RH+RV VCESCE+APAAF               E+HSANPLARRHQRVPILPISG+ +           +T   PE                    ASWL  +                       DEYL+LVDY   N  +D   TG  + +QQ   V Q  Y GD VVP++ E ++     +QQNFQ
Sbjct:    1 MLKQESNDIGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFS--------DEYLNLVDY---NSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLKLEESRGHQCHNQQNFQ 233          
BLAST of FC923762 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.011e-25
Identity = 54/123 (43.90%), Postives = 75/123 (60.98%), Query Frame = 2
Query:  131 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHXXXXXXXXAASWLL 499
            +R+CD+C++ A T++C+AD A+LC  CD ++H AN++A RHERV++CE CEQAPA                 +IHSANPL+RRH+RVPI P   +V G    A+   +          ASWLL
Sbjct:    5 SRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAV-GPAKSASSSVNFVDEDGGDVTASWLL 126          
BLAST of FC923762 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.220e-23
Identity = 57/137 (41.61%), Postives = 77/137 (56.20%), Query Frame = 2
Query:  131 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYG-GRTGATP------------EGHHXXXXXXXXAASWLLL 502
            +++CD+C++A   +YC+ D A+LC +CDS+VH AN++A RH RV++CE CEQAPA                 +IHSANPLARRH+RVP+ P   SV   G    T             +G+         AASWLLL
Sbjct:    3 SKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDGNGSREEEEEEAASWLLL 139          
BLAST of FC923762 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.658e-19
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  131 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPI 397
            AR CD C++    V+C+ D A+LC ACD+R+H       RHERV+VCE CEQAPAA                +IHSANPLA RH+RVP+
Sbjct:   19 ARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSFT----RHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103          
BLAST of FC923762 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 2
Query:  134 RVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISG 412
            R+CD C ++   VYCKAD A LC ACD +VHVAN++  +H R  +C+SC ++P++                + H+A+  +  H R P    +G
Sbjct:   11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETERSVLCQNCDWQHHTAS--SSLHSRRPFEGFTG 101          
The following BLAST results are available for this feature:
BLAST of FC923762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
COL1_ARATH1.060e-4145.98Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL2_ARATH6.868e-4145.81Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH3.769e-3941.80Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL3_ARATH9.011e-2543.90Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH2.220e-2341.61Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL5_ARATH5.658e-1949.44Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL13_ARATH3.324e-1135.48Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC31708F08EF StrClemenN Citrus clementina cDNA clone C31708F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923762 ID=FC923762; Name=FC923762; organism=Citrus clementina; type=EST; length=758bp
GGATTTCGAGTGTGAGAGAAAATTTAAAGAATTAAAAAAAAAAAAGAGAG
AGAGAGAAACAAGAAAACCAACTAATTAAACGATGATGAAAGAGGAGAGC
AACGACGGCAGTGGAGGAGGAAACAGCTGGGCACGTGTGTGTGACACTTG
CAGGGCAGCTGCATGCACGGTCTACTGCAAAGCTGATATGGCGTATCTTT
GCTCTGCATGCGACTCCAGAGTCCATGTAGCCAATCGTGTCGCCTTTAGA
CACGAGCGCGTGTTCGTGTGCGAGTCCTGCGAGCAAGCCCCGGCTGCTTT
CTTATGCAAGGCGGACGCGGCGTCGCTTTGTGCTGCATGTGACGCTGAGA
TTCACTCAGCAAACCCTCTCGCAAGGCGCCACCAGCGGGTCCCTATTCTT
CCGATATCTGGCTCGGTGTACGGGGGAAGGACCGGCGCGACGCCGGAGGG
ACATCATGAGGATGACCAGGACGAGGAAGAAGCGGCTTCGTGGTTGCTGT
TGAGTAATCCTGGGAAGAATTGCGGTAATGGTAATAATGGGAATAATAGT
GGGTTTCTGTTTGGTGGGGAAGTTGATGAGTACTTGGACCTTGTGGATTA
TACTGGTGGGAATCAGTACCTTGATCAGTACAGTACTGGTAACAATAATC
AGCAACAGCACGGTGTTGCTCAAAAGGGTTATGTGGGTGACAGTGTTGTG
CCTGTTCAGTGTGAATTAGCTAAACAAGATCATCATCGTCATCAGCAAAA
TTTTCAAC
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