FC923772

Overview
NameFC923772
Unique NameFC923772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923772 vs. ExPASy Swiss-Prot
Match: PSY_CUCME (Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.096e-90
Identity = 167/188 (88.83%), Postives = 177/188 (94.15%), Query Frame = 1
Query:    1 EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQAATESVYNAALALGIANQLT-NILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPS 561
            EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAP+SQA+TESVYNAALALGIANQ   NILRDVGEDARRGR+YLPQDELAQAGLSD+DIFAG VT KWRNFMKNQIKRARMFFD AE GV EL++ASRWPVWASLLLYRQILDEIEANDY+NFTKRAYVSKAKKI ALP+AY ++LL PS
Sbjct:  235 EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPESQASTESVYNAALALGIANQAPPNILRDVGEDARRGRIYLPQDELAQAGLSDEDIFAGRVTDKWRNFMKNQIKRARMFFDEAEKGVLELNKASRWPVWASLLLYRQILDEIEANDYDNFTKRAYVSKAKKILALPMAYGRALLGPS 422          
BLAST of FC923772 vs. ExPASy Swiss-Prot
Match: PSY_ARATH (Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2)

HSP 1 Score: 332.798 bits (852), Expect = 1.096e-90
Identity = 165/187 (88.24%), Postives = 176/187 (94.12%), Query Frame = 1
Query:    1 EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQAATESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPS 561
            EGMRMDL+KSRY+NFD+LYLYCYYVAGTVGLMSVPVMGI P S+A TESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSD+DIFAG+VT KWRNFMK Q+KRARMFFD AE GVTELS ASRWPVWASLLLYR+ILDEIEANDYNNFTKRAYV K KKIAALP+AYAKS+L+ S
Sbjct:  230 EGMRMDLKKSRYQNFDDLYLYCYYVAGTVGLMSVPVMGIDPKSKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKMQLKRARMFFDEAEKGVTELSAASRWPVWASLLLYRRILDEIEANDYNNFTKRAYVGKVKKIAALPLAYAKSVLKTS 416          
BLAST of FC923772 vs. ExPASy Swiss-Prot
Match: PSY_NARPS (Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus GN=PSY PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 7.103e-90
Identity = 161/186 (86.56%), Postives = 174/186 (93.55%), Query Frame = 1
Query:    1 EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQAATESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRP 558
            EGMRMDL+KSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAP+S A  ESVYNAALALGIANQLTNILRDVGEDARRGR+YLPQDELA+AGLSD+D+F G+VT KWR+FMK QIKRAR FF+ AE GVTELS+ASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSK K++AALP+AY KSLL P
Sbjct:  227 EGMRMDLKKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPESLAEAESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELAEAGLSDEDVFTGKVTDKWRSFMKRQIKRARTFFEQAEKGVTELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKVKRLAALPLAYGKSLLIP 412          
BLAST of FC923772 vs. ExPASy Swiss-Prot
Match: PSY1_SOLLC (Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.212e-89
Identity = 164/188 (87.23%), Postives = 176/188 (93.62%), Query Frame = 1
Query:    1 EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQAATESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPSR 564
            EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVP+MGIAP+S+A TESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSD+DIFAG VT KWR FMK QI RAR FFD AE GVTELS ASR+PVWASL+LYR+ILDEIEANDYNNFTKRAYVSK+KK+ ALPIAYAKSL+ P++
Sbjct:  219 EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGRVTDKWRIFMKKQIHRARKFFDEAEKGVTELSSASRFPVWASLVLYRKILDEIEANDYNNFTKRAYVSKSKKLIALPIAYAKSLVPPTK 406          
BLAST of FC923772 vs. ExPASy Swiss-Prot
Match: PSY_CAPAN (Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.340e-88
Identity = 164/188 (87.23%), Postives = 174/188 (92.55%), Query Frame = 1
Query:    1 EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQAATESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPSR 564
            EGMRMDLRKSRY+NFDELYLYCYYVAGTVGLMSVP+MGIAP+S+A TESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSD+DIFAG VT KWR FMK QI+RAR FFD AE GVTELS ASRWPV ASLLLYR+ILDEIEANDYNNFTKRAYVSK KK+ ALPIAYAKSL+  +R
Sbjct:  231 EGMRMDLRKSRYRNFDELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGRVTDKWRIFMKKQIQRARKFFDEAEKGVTELSAASRWPVLASLLLYRRILDEIEANDYNNFTKRAYVSKPKKLIALPIAYAKSLVPSTR 418          
BLAST of FC923772 vs. ExPASy Swiss-Prot
Match: PSY_MAIZE (Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.481e-87
Identity = 158/186 (84.95%), Postives = 170/186 (91.40%), Query Frame = 1
Query:    1 EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQAATESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRP 558
            EGMR DLRK+RY NFDELY+YCYYVAGTVGLMSVPVMGIA +S+A TESVY+AALALGIANQLTNILRDVGEDARRGR+YLPQDELAQAGLSD+DIF G VT +WRNFMK QIKRARMFF+ AE GV ELS+ASRWPVWASLLLYRQILDEIEANDYNNFTKRAYV K KK+ ALP+AY KSLL P
Sbjct:  217 EGMRSDLRKTRYNNFDELYMYCYYVAGTVGLMSVPVMGIATESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQDELAQAGLSDEDIFKGVVTNRWRNFMKRQIKRARMFFEEAERGVNELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVGKGKKLLALPVAYGKSLLLP 402          
BLAST of FC923772 vs. ExPASy Swiss-Prot
Match: PSY2_SOLLC (Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum lycopersicum GN=PSY2 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 9.600e-87
Identity = 160/186 (86.02%), Postives = 171/186 (91.94%), Query Frame = 1
Query:    1 EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQAATESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRP 558
            EGMRMDL KSRY NFDELYLYCYYVAGTVGLMSVP+MGIAP+S+A TESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSD+DIFAG+VT KWR FMK QI+RAR FFD AE GVTELS ASRWPV ASLLLYR+ILDEIEANDYNNFT+RAYVSK KK+  LPIAYA+SL+ P
Sbjct:  115 EGMRMDLWKSRYNNFDELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRIFMKKQIQRARKFFDEAEKGVTELSSASRWPVLASLLLYRKILDEIEANDYNNFTRRAYVSKPKKLLTLPIAYARSLVPP 300          
BLAST of FC923772 vs. ExPASy Swiss-Prot
Match: PSY_DAUCA (Phytoene synthase, chloroplastic OS=Daucus carota GN=PSY PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 8.410e-83
Identity = 148/189 (78.31%), Postives = 170/189 (89.95%), Query Frame = 1
Query:    1 EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQAATESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPSRI 567
            +GMRMDL+KSRY+ FDELYLYCYYVAGTVGLMSVPVMGIAP+S+A TESVY+AALALGIANQLTNILRDVGEDARRGR+YLPQ+EL  AG++ + IF G+VT KWR+FMK QIKRARMFFD AE GV ELS ASRWPVWASLLLY+QILD IEANDY+NFTKRAYV KAKK+ +LP+AY+++L  PS +
Sbjct:  209 DGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTV 397          
BLAST of FC923772 vs. ExPASy Swiss-Prot
Match: CRTB_SYNE7 (Phytoene synthase OS=Synechococcus elongatus (strain PCC 7942) GN=crtB PE=3 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 6.710e-56
Identity = 109/188 (57.98%), Postives = 136/188 (72.34%), Query Frame = 1
Query:    1 EGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGI------APDSQAATESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKS 546
            EG RMDL ++RY  F++LY YCY VAGTVGLMS PVMGI      AP            ALALGIANQLTNILRDVGEDARRGR+YLPQ+ELAQ   S+ D+F G +  +WR FM+ Q+ RAR +F+ AE G+ +LS  +RWPVWASL+LYR+ILD IE N+Y+ F KRAYV   +K+ +LP+A  ++
Sbjct:  118 EGQRMDLLQNRYSTFEDLYTYCYRVAGTVGLMSQPVMGIESTNSRAPWDPTTPPDPTQEALALGIANQLTNILRDVGEDARRGRIYLPQEELAQFNYSEQDLFNGVIDDRWRAFMQFQLDRARDYFEQAERGIRQLSHDARWPVWASLMLYREILDVIEQNNYDVFRKRAYVPTWRKLCSLPVAMLRA 305          
BLAST of FC923772 vs. ExPASy Swiss-Prot
Match: CRTY_SPIPL (Phytoene synthase OS=Spirulina platensis GN=crtB PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.677e-52
Identity = 106/188 (56.38%), Postives = 133/188 (70.74%), Query Frame = 1
Query:    4 GMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIA-PDSQAA---TESVY---NAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKS 546
            G RMDL ++RY  FDEL LYCY VAGTVGLMS+ VMG A PD        +S+Y     A+ALGIANQLTNILRDVGEDARRGR+YLP D+LA    ++ D+  G+V  +WR  M+ QI+RAR F+ +AE G+  L    RWPVW +L+LYRQILDEIE N+Y+ F +RAYV   KK+  LP+A  ++
Sbjct:  119 GQRMDLSRNRYNTFDELNLYCYRVAGTVGLMSLAVMGTAEPDLSVPWNRDQSIYYPKEEAIALGIANQLTNILRDVGEDARRGRIYLPLDDLALFNYTEADLLNGKVDERWRELMRFQIQRARKFYTLAEEGIAALHPDIRWPVWTALMLYRQILDEIERNEYDVFNQRAYVPTWKKMMCLPLAQLRA 306          
The following BLAST results are available for this feature:
BLAST of FC923772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PSY_CUCME1.096e-9088.83Phytoene synthase, chloroplastic OS=Cucumis melo G... [more]
PSY_ARATH1.096e-9088.24Phytoene synthase, chloroplastic OS=Arabidopsis th... [more]
PSY_NARPS7.103e-9086.56Phytoene synthase, chloroplastic OS=Narcissus pseu... [more]
PSY1_SOLLC1.212e-8987.23Phytoene synthase 1, chloroplastic OS=Solanum lyco... [more]
PSY_CAPAN1.340e-8887.23Phytoene synthase, chloroplastic OS=Capsicum annuu... [more]
PSY_MAIZE1.481e-8784.95Phytoene synthase, chloroplastic OS=Zea mays GN=Y1... [more]
PSY2_SOLLC9.600e-8786.02Phytoene synthase 2, chloroplastic (Fragment) OS=S... [more]
PSY_DAUCA8.410e-8378.31Phytoene synthase, chloroplastic OS=Daucus carota ... [more]
CRTB_SYNE76.710e-5657.98Phytoene synthase OS=Synechococcus elongatus (stra... [more]
CRTY_SPIPL7.677e-5256.38Phytoene synthase OS=Spirulina platensis GN=crtB P... [more]

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Properties
Property NameValue
Genbank descriptionC31708G06EF StrClemenN Citrus clementina cDNA clone C31708G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923772 ID=FC923772; Name=FC923772; organism=Citrus clementina; type=EST; length=705bp
GAAGGAATGAGGATGGACCTTAGGAAGTCAAGATACAAAAACTTTGATGA
ATTATACTTGTATTGTTATTATGTTGCTGGGACCGTAGGGCTAATGAGTG
TTCCAGTTATGGGCATAGCACCTGACTCACAGGCAGCAACAGAGAGCGTC
TACAATGCAGCATTGGCACTAGGGATTGCTAATCAGCTCACTAACATACT
CAGAGATGTTGGAGAGGATGCCCGAAGAGGGAGGGTTTATCTACCACAAG
ATGAGTTGGCACAGGCAGGGCTTTCAGATGATGACATATTTGCTGGAGAG
GTGACCATTAAATGGAGAAACTTCATGAAGAACCAAATTAAGAGGGCAAG
GATGTTCTTTGATATGGCTGAGAACGGTGTGACCGAGCTGAGTGAAGCTA
GTCGATGGCCGGTATGGGCTTCATTGCTGTTGTACCGGCAAATACTGGAT
GAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAG
TAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCT
TACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACA
TCAAAGTTTAGAAGCATATATAGTTGAAAACGGATTCAAGTGGAAAAAAA
AATGAAAATGATTGCTTGTATATTAGGAATTGTTGGTATGCAGCATGTAT
TTGAT
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