FC923773

Overview
NameFC923773
Unique NameFC923773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 8.892e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 308
            FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP
Sbjct:  222 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 323          
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.244e-44
Identity = 86/102 (84.31%), Postives = 98/102 (96.08%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 308
            FEEG+IGTPQ+TDS+VLPENVEFLGQKIDLSPFKG+++SVQDTASSVAK+ISSQPP+KF I+N+NAQSWLLTTYLD++LRISR DAGSVFV IKEGSPLL P
Sbjct:  225 FEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSISSQPPIKFPITNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSPLLKP 326          
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.063e-43
Identity = 83/102 (81.37%), Postives = 96/102 (94.12%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 308
            FEEG+IGTPQ+TDS+VLPENVEFLGQKID+SPFKG+++SVQDTASSV K+ISSQPP+KF I+N+NAQSWLLTTYLD++LRI R DAGSVFV IKEGSPLL P
Sbjct:  225 FEEGIIGTPQLTDSIVLPENVEFLGQKIDVSPFKGLITSVQDTASSVVKSISSQPPIKFPITNNNAQSWLLTTYLDDELRIPRGDAGSVFVLIKEGSPLLKP 326          
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.170e-40
Identity = 78/100 (78.00%), Postives = 91/100 (91.00%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLL 302
            FEEGVIGTPQ+TDS+V+P+NV+FLGQKID +PF GI+SS+QDTAS+VAKTISSQPP+KFSISN+  +SWLLTTYLDEDLRISR D GSVFV +KEGS  L
Sbjct:  221 FEEGVIGTPQLTDSIVIPDNVDFLGQKIDFTPFNGIISSLQDTASNVAKTISSQPPIKFSISNTRVESWLLTTYLDEDLRISRGDGGSVFVLLKEGSSFL 320          
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: PAP2_BRACM (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.407e-40
Identity = 79/102 (77.45%), Postives = 92/102 (90.20%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 308
            FEEGVIGTPQ+TDS+ +PE VEFLGQKIDL+P +G+L+SVQDTA+SVA+TISSQPPLKFS+   +AQSWLLTTYLD+D+RISR D GSVFV IKEGSPLL P
Sbjct:  218 FEEGVIGTPQLTDSIEIPEYVEFLGQKIDLTPIRGLLTSVQDTATSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPLLNP 319          
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: PAP2_ARATH (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.573e-39
Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 308
            FE+GVIGTPQ+TDS+ +PE VE LGQKIDL+P +G+L+SVQDTASSVA+TISSQPPLKFS+   NAQSWLLTTYLD+D+RISR D GSVFV IKEGSPLL P
Sbjct:  209 FEQGVIGTPQLTDSIEIPEYVEVLGQKIDLNPIRGLLTSVQDTASSVARTISSQPPLKFSLPADNAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPLLNP 310          
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.020e-38
Identity = 77/102 (75.49%), Postives = 91/102 (89.22%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 308
            FE+GVIGTPQ+TDS+ +PE+VE LGQKIDL+P KG+L+SVQDTASSVA+TIS+QPPLKFS+ + N QSWLLTTYLD+DLRISR D GSV+V IKEGS LL P
Sbjct:  217 FEQGVIGTPQLTDSIEIPESVEVLGQKIDLNPIKGLLTSVQDTASSVARTISNQPPLKFSLPSDNTQSWLLTTYLDKDLRISRGDGGSVYVLIKEGSSLLNP 318          
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: PAP1_BRACM (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.272e-38
Identity = 78/102 (76.47%), Postives = 90/102 (88.24%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 308
            FE+GVIGTPQ+TDS+ +PE VE LGQKIDL+P KG+L+SVQDTASSVA+TISSQPPLKFS+   +AQSWLLTTYLD+DLRISR D GSVFV I+EGS LL P
Sbjct:  226 FEQGVIGTPQLTDSIEIPEFVEVLGQKIDLNPIKGLLTSVQDTASSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDLRISRGDGGSVFVLIREGSSLLNP 327          
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: PAP2_ORYSJ (Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.200e-33
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLL 302
            F+EG+IGTPQ+TDS+VLPE  E  GQ IDL+P KGI SS+++ ASSVA+TIS QPPLK  I   NA+SWLLTTYLD++LRISR D  S+FV  KEGS LL
Sbjct:  219 FDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLKGIFSSIENAASSVARTISGQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFKEGSTLL 318          
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: PAP3_ORYSJ (Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.981e-22
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSI-SNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLL 302
            F+EG    P+++ S+ LP  V+  GQKI L P + +L+ +Q   +S+A +IS QPPLK  I  N+ A+SWLLTTYLD+DLRISR D G +F+ +KEGSPLL
Sbjct:  272 FKEGSFQPPKISSSVDLPAEVDIFGQKISLGPVQQVLNPLQQAFASIAGSISGQPPLKLPIPGNNRARSWLLTTYLDKDLRISRGD-GGLFILVKEGSPLL 371          
The following BLAST results are available for this feature:
BLAST of FC923773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP_CITUN8.892e-51100.00Plastid-lipid-associated protein, chloroplastic OS... [more]
LIPC_SOLTU1.244e-4484.31Light-induced protein, chloroplastic OS=Solanum tu... [more]
LIPC_SOLDE3.063e-4381.37Light-induced protein, chloroplastic OS=Solanum de... [more]
CHRC_CUCSA3.170e-4078.00Chromoplast-specific carotenoid-associated protein... [more]
PAP2_BRACM5.407e-4077.45Plastid lipid-associated protein 2, chloroplastic ... [more]
PAP2_ARATH1.573e-3977.45Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_ARATH1.020e-3875.49Probable plastid-lipid-associated protein 1, chlor... [more]
PAP1_BRACM2.272e-3876.47Plastid lipid-associated protein 1, chloroplastic ... [more]
PAP2_ORYSJ2.200e-3367.00Probable plastid-lipid-associated protein 2, chlor... [more]
PAP3_ORYSJ2.981e-2252.48Probable plastid-lipid-associated protein 3, chlor... [more]

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Properties
Property NameValue
Genbank descriptionC31708G07EF StrClemenN Citrus clementina cDNA clone C31708G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923773 ID=FC923773; Name=FC923773; organism=Citrus clementina; type=EST; length=556bp
AGTTCGAGGAAGGTGTCATTGGGACTCCTCAGGTAACTGATTCACTAGTG
TTACCGGAAAATGTTGAATTCTTGGGACAAAAGATTGATCTCTCACCCTT
CAAAGGCATACTCTCTTCAGTCCAAGACACAGCTTCATCTGTTGCAAAGA
CCATTTCTAGCCAACCACCTTTGAAGTTCTCTATCTCTAACAGCAATGCT
CAATCATGGTTGCTAACCACATACCTTGATGAAGATCTTCGGATTTCAAG
GGCAGATGCTGGCAGCGTCTTTGTTTTCATCAAGGAAGGAAGCCCCCTCT
TGATGCCATGAATGCACACCCAAATGGTCACTCCTACGGTATGGTAATAT
TGAATAAAGACTTGAACGTGTTGCTGCTTTCTAAGTATATACAAGTAATG
GAATGATAACATCGGTGTTACTAGATCTGCAGCTAGATACCAGTGCAGTA
GATTACAAAGTAGGAAGTGAGTAAATACTAAATAATTTTTTGTGCCCCCT
AATCTGTCTTAGTAGTTGAACTTGTGTGTTCAATTAAATATAATTATTTG
AAATTC
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