FC923774

Overview
NameFC923774
Unique NameFC923774
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23
Identity = 70/175 (40.00%), Postives = 82/175 (46.86%), Query Frame = 2
Query:   38 AECGTGCRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGG--------RTGATPE-----GHHXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGNQYLDQYSTGY 523
            A C   CR    +L S CD++VH ANR+A RHERV VC+SCE+APAAF               EIHSANPLARRHQRVPILPIS   Y           T   PE     G          AASWLL +                       DE+L+LVDY+  ++     S  Y
Sbjct:   18 AACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG---------DEFLNLVDYSSSDKQFTDQSNQY 183          
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.036e-23
Identity = 69/164 (42.07%), Postives = 78/164 (47.56%), Query Frame = 2
Query:   38 AECGTGCRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGG--NQYLDQYSTGY 523
            A C   C     +L + CD+RVH ANRVA RHERV VC+SCE APAAF               EIHSANPLARRHQRVPILP+S +       A  E            ASWLL +                        EYLDLVDY+    NQ+ D   T Y
Sbjct:   22 AACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSM--APSETDADNDEDDREVASWLLPNPGKNIGNQNNGFLFGV--------EYLDLVDYSSSMDNQFEDNQYTHY 175          
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.884e-20
Identity = 49/90 (54.44%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   44 CGTGCRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRT 313
            C   C     +L   CD++VH ANRVA RH+RV VCESCE+APAAF               E+HSANPLARRHQRVPILPISG+ +   T
Sbjct:   28 CTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMT 117          
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.673e-17
Identity = 46/108 (42.59%), Postives = 58/108 (53.70%), Query Frame = 2
Query:   56 CRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHXXXXXXXXAASWLL 379
            CR    FL   CD ++H AN++A RHERV++CE CEQAPA                 +IHSANPL+RRH+RVPI P   +V G    A+   +          ASWLL
Sbjct:   20 CRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAV-GPAKSASSSVNFVDEDGGDVTASWLL 126          
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.677e-16
Identity = 51/122 (41.80%), Postives = 61/122 (50.00%), Query Frame = 2
Query:   56 CRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYG-GRTGATP------------EGHHXXXXXXXXAASWLLL 382
            CR    FL   CDS+VH AN++A RH RV++CE CEQAPA                 +IHSANPLARRH+RVP+ P   SV   G    T             +G+         AASWLLL
Sbjct:   18 CRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDGNGSREEEEEEAASWLLL 139          
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.088e-11
Identity = 36/74 (48.65%), Postives = 42/74 (56.76%), Query Frame = 2
Query:   56 CRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPI 277
            CR    FL   CD+R+H   R    HERV+VCE CEQAPAA                +IHSANPLA RH+RVP+
Sbjct:   34 CRVDSAFLCIACDTRIHSFTR----HERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103          
The following BLAST results are available for this feature:
BLAST of FC923774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
COL1_ARATH5.298e-2340.00Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL2_ARATH9.036e-2342.07Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH1.884e-2054.44Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL3_ARATH5.673e-1742.59Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH3.677e-1641.80Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL5_ARATH2.088e-1148.65Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC31708G08EF StrClemenN Citrus clementina cDNA clone C31708G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923774 ID=FC923774; Name=FC923774; organism=Citrus clementina; type=EST; length=524bp
AAACGGCTGAGGCGGTGGGATCCAGCATTCCATGATGGCTGAATGCGGTA
CCGGATGCAGACGACAGATTTGGTTTCTTTACTCTCCATGCGACTCCAGA
GTCCATGTAGCCAATCGTGTCGCCTTTAGACACGAGCGCGTGTTCGTGTG
CGAGTCCTGCGAGCAAGCCCCGGCTGCTTTCTTATGCAAGGCGGACGCGG
CGTCGCTTTGTGCTGCATGTGACGCTGAGATTCACTCAGCAAACCCTCTC
GCAAGGCGCCACCAGCGGGTCCCTATTCTTCCGATATCTGGCTCGGTGTA
CGGGGGAAGGACCGGCGCGACGCCGGAGGGACATCATGAGGATGACCAGG
ACGAGGAAGAAGCGGCTTCGTGGTTGCTGTTGAGTAATCCTGGGAAGAAT
TGCGGTAATGGTAATAATGGGAATAATAGTGGGTTTCTGTTTGGTGGGGA
AGTTGATGAGTACTTGGACCTTGTGGATTATACTGGTGGGAATCAGTACC
TTGATCAGTACAGTACTGGGTACA
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