FC923774
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23 Identity = 70/175 (40.00%), Postives = 82/175 (46.86%), Query Frame = 2 Query: 38 AECGTGCRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGG--------RTGATPE-----GHHXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGGNQYLDQYSTGY 523 A C CR +L S CD++VH ANR+A RHERV VC+SCE+APAAF EIHSANPLARRHQRVPILPIS Y T PE G AASWLL + DE+L+LVDY+ ++ S Y Sbjct: 18 AACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG---------DEFLNLVDYSSSDKQFTDQSNQY 183
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 9.036e-23 Identity = 69/164 (42.07%), Postives = 78/164 (47.56%), Query Frame = 2 Query: 38 AECGTGCRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHXXXXXXXXAASWLLLSXXXXXXXXXXXXXXXXXXXXXEVDEYLDLVDYTGG--NQYLDQYSTGY 523 A C C +L + CD+RVH ANRVA RHERV VC+SCE APAAF EIHSANPLARRHQRVPILP+S + A E ASWLL + EYLDLVDY+ NQ+ D T Y Sbjct: 22 AACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSM--APSETDADNDEDDREVASWLLPNPGKNIGNQNNGFLFGV--------EYLDLVDYSSSMDNQFEDNQYTHY 175
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.884e-20 Identity = 49/90 (54.44%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 44 CGTGCRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRT 313 C C +L CD++VH ANRVA RH+RV VCESCE+APAAF E+HSANPLARRHQRVPILPISG+ + T Sbjct: 28 CTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMT 117
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 5.673e-17 Identity = 46/108 (42.59%), Postives = 58/108 (53.70%), Query Frame = 2 Query: 56 CRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPEGHHXXXXXXXXAASWLL 379 CR FL CD ++H AN++A RHERV++CE CEQAPA +IHSANPL+RRH+RVPI P +V G A+ + ASWLL Sbjct: 20 CRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAV-GPAKSASSSVNFVDEDGGDVTASWLL 126
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 3.677e-16 Identity = 51/122 (41.80%), Postives = 61/122 (50.00%), Query Frame = 2 Query: 56 CRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYG-GRTGATP------------EGHHXXXXXXXXAASWLLL 382 CR FL CDS+VH AN++A RH RV++CE CEQAPA +IHSANPLARRH+RVP+ P SV G T +G+ AASWLLL Sbjct: 18 CRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDGNGSREEEEEEAASWLLL 139
BLAST of FC923774 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 2.088e-11 Identity = 36/74 (48.65%), Postives = 42/74 (56.76%), Query Frame = 2 Query: 56 CRRQIWFLYSPCDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPI 277 CR FL CD+R+H R HERV+VCE CEQAPAA +IHSANPLA RH+RVP+ Sbjct: 34 CRVDSAFLCIACDTRIHSFTR----HERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103 The following BLAST results are available for this feature:
BLAST of FC923774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923774 ID=FC923774; Name=FC923774; organism=Citrus clementina; type=EST; length=524bpback to top |