FC923784

Overview
NameFC923784
Unique NameFC923784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923784 vs. ExPASy Swiss-Prot
Match: CLH_DICDI (Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.842e-55
Identity = 95/157 (60.51%), Postives = 127/157 (80.89%), Query Frame = 1
Query:    1 VSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDELVKD 471
            V+A+NEALNE+YVEEEDYE LR SID + NF  I LAQK+EKHELLE RR+AAY+YKK  RW QS+ LSKKDK+YKDA+++AS S +  + EELL YF++Q     FA+CL+ CYD ++PD  +EL+W NN+++++FPYL+Q+++EYT KVD+LV D
Sbjct: 1461 VAALNEALNELYVEEEDYESLRSSIDANSNFGTIALAQKLEKHELLEFRRIAAYLYKKNNRWAQSVELSKKDKLYKDAIQSASDSKNPAIGEELLQYFVDQQNNSAFAACLYTCYDFLKPDAVIELAWRNNILNYSFPYLIQYVKEYTTKVDQLVDD 1617          
BLAST of FC923784 vs. ExPASy Swiss-Prot
Match: CLH_RAT (Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.218e-52
Identity = 91/152 (59.87%), Postives = 123/152 (80.92%), Query Frame = 1
Query:    7 AVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 462
            +VNE+LN +++ EEDY+ LR SID +DNFD I LAQ++EKHEL+E RR+AAY++K   RWKQS+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W +N++DFA PY +Q ++EY  KVD+L
Sbjct: 1462 SVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of FC923784 vs. ExPASy Swiss-Prot
Match: CLH_MOUSE (Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.218e-52
Identity = 91/152 (59.87%), Postives = 123/152 (80.92%), Query Frame = 1
Query:    7 AVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 462
            +VNE+LN +++ EEDY+ LR SID +DNFD I LAQ++EKHEL+E RR+AAY++K   RWKQS+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W +N++DFA PY +Q ++EY  KVD+L
Sbjct: 1462 SVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of FC923784 vs. ExPASy Swiss-Prot
Match: CLH1_HUMAN (Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5)

HSP 1 Score: 206.453 bits (524), Expect = 1.218e-52
Identity = 91/152 (59.87%), Postives = 123/152 (80.92%), Query Frame = 1
Query:    7 AVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 462
            +VNE+LN +++ EEDY+ LR SID +DNFD I LAQ++EKHEL+E RR+AAY++K   RWKQS+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W +N++DFA PY +Q ++EY  KVD+L
Sbjct: 1462 SVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of FC923784 vs. ExPASy Swiss-Prot
Match: CLH1_BOVIN (Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.218e-52
Identity = 91/152 (59.87%), Postives = 123/152 (80.92%), Query Frame = 1
Query:    7 AVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 462
            +VNE+LN +++ EEDY+ LR SID +DNFD I LAQ++EKHEL+E RR+AAY++K   RWKQS+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W +N++DFA PY +Q ++EY  KVD+L
Sbjct: 1462 SVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of FC923784 vs. ExPASy Swiss-Prot
Match: CLH_DROME (Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.714e-52
Identity = 94/152 (61.84%), Postives = 123/152 (80.92%), Query Frame = 1
Query:    7 AVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 462
            A+NEALN + ++EEDY+ LR SID  DNFD I LAQK+EKHEL E RR+AAY+YK   RWKQS+ L KKDK+YKDAME A++S  +++AEELL +F+E+   +CFA+CL+ CYDL+RPDV LEL+W + ++DFA PYL+Q +REYT KVD+L
Sbjct: 1463 AINEALNGLLIDEEDYQGLRNSIDGFDNFDNIALAQKLEKHELTEFRRIAAYLYKGNNRWKQSVELCKKDKLYKDAMEYAAESCKQDIAEELLGWFLERDAYDCFAACLYQCYDLLRPDVILELAWKHKIVDFAMPYLIQVLREYTTKVDKL 1614          
BLAST of FC923784 vs. ExPASy Swiss-Prot
Match: CLH2_HUMAN (Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.919e-51
Identity = 90/152 (59.21%), Postives = 121/152 (79.61%), Query Frame = 1
Query:    7 AVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 462
            +VNEALN +  EEEDY+ LR SID +DNFD I LAQ++EKH+L+E R +AAY+YK    W QS+ L KKD +YKDAM+ A++S D ELA++LL +F+E+GK+ECFA+CLF CYDL+RPD+ LEL+W +N++D A PY +Q +REY  KVD+L
Sbjct: 1462 SVNEALNHLLTEEEDYQGLRASIDAYDNFDNISLAQQLEKHQLMEFRCIAAYLYKGNNWWAQSVELCKKDHLYKDAMQHAAESRDAELAQKLLQWFLEEGKRECFAACLFTCYDLLRPDMVLELAWRHNLVDLAMPYFIQVMREYLSKVDKL 1613          
BLAST of FC923784 vs. ExPASy Swiss-Prot
Match: CLH_CAEEL (Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.460e-45
Identity = 81/158 (51.27%), Postives = 123/158 (77.85%), Query Frame = 1
Query:    7 AVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDELVKDKIE 480
            A+NEALN++ ++EED+  LR SI+  DNFD I LAQ++EKH L+E RR++AY++K   RWKQSI L KKDK+YKDAME A++S + ELAEELL +F+++   +CFA+ L+ CYDL+ PDV +EL+W + ++D+A PY++Q +R+Y  ++++L + + E
Sbjct: 1464 AINEALNQLLIDEEDHAGLRSSIEAQDNFDNITLAQQLEKHPLVEFRRISAYLFKGNNRWKQSIELCKKDKLYKDAMEYAAESRNGELAEELLSFFLDEKLYDCFAASLYHCYDLLHPDVIMELAWKHKIMDYAMPYMIQVMRDYQTRLEKLERSEHE 1621          
BLAST of FC923784 vs. ExPASy Swiss-Prot
Match: CLH_SCHPO (Probable clathrin heavy chain OS=Schizosaccharomyces pombe GN=chc1 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 80/162 (49.38%), Postives = 113/162 (69.75%), Query Frame = 1
Query:    1 VSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQ 486
            + AVN A N++ +E EDY+ L++SI+ +D+FD I LA+++EKH LLE RR+AAYIY+K  RW QSI LSK+D+ YKDA+ TA  S    +AE+L+ YF+E G  ECFA+ L+ CY L+R D+ +E+SW   + D+A+PY + F  E   KV  L KD  + Q
Sbjct: 1455 IQAVNHAYNDLLIEMEDYQSLQDSIENYDHFDAIALARRLEKHSLLEFRRIAAYIYRKNKRWTQSIELSKQDRFYKDAIITARDSDQTTIAEDLMKYFVEIGNYECFAAILYTCYHLLRNDLVMEISWRKGLQDYAYPYFINFQCEMFSKVLNLEKDLKDRQ 1616          
BLAST of FC923784 vs. ExPASy Swiss-Prot
Match: CLH_YEAST (Clathrin heavy chain OS=Saccharomyces cerevisiae GN=CHC1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33
Identity = 57/156 (36.54%), Postives = 111/156 (71.15%), Query Frame = 1
Query:    4 SAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDELVKD 471
            S VN+A +++ +EEEDY+ L++++D +D FDQ+GLA ++E H+L+  +++ A +Y++  +W +S+++ K++K++KDA+ETA+ S D ++ E LL YF+E G +E F + L+  Y+L+R +  LE+SWMN++ D+  P+ +   +E    + ++ ++
Sbjct: 1467 SVVNQAYHDLMIEEEDYKALQDAVDSYDKFDQLGLASRLESHKLIFFKKIGALLYRRNKKWAKSLSILKEEKLWKDAIETAAISQDPKVVEALLTYFVETGNREGFVALLYAAYNLVRIEFVLEISWMNSLEDYIKPFEISIKKEQNDSIKKITEE 1622          
The following BLAST results are available for this feature:
BLAST of FC923784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CLH_DICDI5.842e-5560.51Clathrin heavy chain OS=Dictyostelium discoideum G... [more]
CLH_RAT1.218e-5259.87Clathrin heavy chain 1 OS=Rattus norvegicus GN=Clt... [more]
CLH_MOUSE1.218e-5259.87Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=... [more]
CLH1_HUMAN1.218e-5259.87Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=... [more]
CLH1_BOVIN1.218e-5259.87Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 ... [more]
CLH_DROME2.714e-5261.84Clathrin heavy chain OS=Drosophila melanogaster GN... [more]
CLH2_HUMAN3.919e-5159.21Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 P... [more]
CLH_CAEEL2.460e-4551.27Probable clathrin heavy chain 1 OS=Caenorhabditis ... [more]
CLH_SCHPO5.672e-4249.38Probable clathrin heavy chain OS=Schizosaccharomyc... [more]
CLH_YEAST2.821e-3336.54Clathrin heavy chain OS=Saccharomyces cerevisiae G... [more]
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Properties
Property NameValue
Genbank descriptionC31708H06EF StrClemenN Citrus clementina cDNA clone C31708H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923784 ID=FC923784; Name=FC923784; organism=Citrus clementina; type=EST; length=721bp
GTTTCTGCTGTGAACGAGGCTTTGAATGAGATTTACGTTGAGGAGGAGGA
CTACGAGAGATTGCGTGAATCTATTGATATGCATGATAACTTTGATCAGA
TTGGCCTTGCACAGAAGATTGAGAAACATGAGCTTTTGGAAATGAGACGA
GTCGCTGCATATATTTACAAAAAGGCTGGCAGATGGAAGCAATCTATTGC
ACTGTCAAAGAAAGACAAGGTTTACAAAGATGCGATGGAGACTGCCTCAC
AATCTGGTGATCGTGAACTTGCAGAGGAGTTGCTGGTTTATTTCATAGAA
CAGGGGAAGAAGGAATGCTTTGCGTCATGCCTGTTCGTTTGTTATGATTT
GATCAGACCTGATGTTGCTCTTGAACTTTCTTGGATGAACAACATGATCG
ACTTTGCCTTCCCATATCTCTTGCAGTTTATCCGTGAATACACAGGCAAA
GTTGATGAACTTGTGAAGGACAAAATTGAGGCTCAAATTGAAGTCAAGTC
TAAAGAGAAAGAAGAAAAGGATGTAATTGCACAACAGAATATGTATGCTC
AATTGCTGCCTCTTGCTTTGCCTGCGCCACCTATGCCTGGTATGGGAGGT
GGTTTTGCTTCAACAGCACCACCTATGGGTGGAATGGGAATGCCTCCGAT
GCCTCCTTTCGGCATGCCTCCAATGGGTAGCTACTGATTTTGTTGATCAG
ATCGGGAAATAGGTGTAGTTG
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