FC923789

Overview
NameFC923789
Unique NameFC923789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923789 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 57/75 (76.00%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  481 SGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXXQAVKVVDIVDTFRLXETTAFE 705
            +GDELLSDSFPYKEI NGMLWEVEGKWV+QGAVNVDIGANPSA           QAVKVVDIVDTFRL E  AF+
Sbjct:    9 TGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDIVDTFRLQEQPAFD 83          
BLAST of FC923789 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 56/75 (74.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  481 SGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXXQAVKVVDIVDTFRLXETTAFE 705
            +GDELLSDSFPYKEI NG+LWEVEGKWVVQGAV+VDIGANPSA           QAVKVVDIVDTFRL E  AF+
Sbjct:    9 TGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFD 83          
BLAST of FC923789 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query:  481 SGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXXQAVKVVDIVDTFRLXETTAFE 705
            +GDELLSDSFPYKEI+NGMLWEV+GKWVVQGAV+V+IGANPSA           QAVKVVDIVDTFRL E  AF+
Sbjct:    9 TGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFD 83          
BLAST of FC923789 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  481 SGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXXQAVKVVDIVDTFRLXETTAFE 705
            SGDELLSDSFPYKEIENGM+WEVEGKWVV+GAV+VDIGANPSA           QAVKVVDIVDTFRL E  + +
Sbjct:    9 SGDELLSDSFPYKEIENGMIWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPSMD 83          
BLAST of FC923789 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 54/70 (77.14%), Postives = 58/70 (82.86%), Query Frame = 1
Query:  481 SGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXXQAVKVVDIVDTFRLXE 690
            +GDELLSDSFPYKE+ENGM+WEVEGKWVVQGAV+VDIGANPSA           QAVKVVDIVDTFRL E
Sbjct:    9 TGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQE 78          
BLAST of FC923789 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  481 SGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXXQAVKVVDIVDTFRLXETTAFE 705
            SGDELLSDSFPY+E+ENG+LWEV+G WVVQGAV+VDIGANPSA           QAVKVVDIVDTFRL E  AF+
Sbjct:    9 SGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPAFD 83          
BLAST of FC923789 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  481 SGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXXQAVKVVDIVDTFRLXETTAFE 705
            SGDELLSDSFPY+E+ENG+LWEV+G WVVQGAV+VDIGANPSA           QAVKVVDIVDTFRL E  AF+
Sbjct:    9 SGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFD 83          
BLAST of FC923789 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:  481 SGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXXQAVKVVDIVDTFRLXETTAFE 705
            +GDELLSDSFPYKE+ENG+LWEV+GKWVVQGAV+V+IGANPSA           QAV+VVDIVDTFRL E  AF+
Sbjct:    9 TGDELLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDIVDTFRLQEQPAFD 83          
BLAST of FC923789 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  481 SGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXXQAVKVVDIVDTFRLXETTAFE 705
            +GDELLSDSFPY+EIENG+LWEV+GKWVVQGA++VDIGANPSA           QAVKVVDIVDTFRL E   F+
Sbjct:    9 TGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFD 83          
BLAST of FC923789 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 55/75 (73.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:  481 SGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXXQAVKVVDIVDTFRLXETTAFE 705
            +GDELLSDSF YKEIENGMLWEVEGKWVV+GAV+VDIGANPSA            AVKVVDIVDTFRL E  AF+
Sbjct:    9 TGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDIVDTFRLQEQPAFD 83          
The following BLAST results are available for this feature:
BLAST of FC923789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TCTP_ELAGV2.750e-2576.00Translationally-controlled tumor protein homolog O... [more]
TCTP_HEVBR2.328e-2474.67Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU3.970e-2473.33Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME5.186e-2473.33Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA8.845e-2477.14Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT1.155e-2372.00Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU1.155e-2372.00Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC1.509e-2370.67Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ1.509e-2370.67Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN3.361e-2373.33Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionC31708H11EF StrClemenN Citrus clementina cDNA clone C31708H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923789 ID=FC923789; Name=FC923789; organism=Citrus clementina; type=EST; length=705bp
GGAACTGCAATTTCGGTAAGAACGAGAGGTAAATTGGTAAGTCTGAACAC
AACAGAGTTTGGCGCCTCAGGCTCCGCTGAAAACGCTCAGGCTCTTTTAA
TTTGCTCTCTTATTTCAGTTTTCTGAATCAAATTAAACAGATACCAAAAA
AAAAAAAAATTTCATAAGCATTAAACATGTTAGTTTATCAGGATCTTCTC
TCTGGTAATCCTCTTTTTCTTTGAAATTCTGAATTATTTCTATTGATTTT
TCTGTCAAATATATGTTTATTTGTTCGTATATTTGTTTGATTTCATGCAG
AATATATATATATATATATTTTCCATTGAATATAGCTATGTTAAACAAAA
ATATGAAAAGGGTATTTTTTAAATTTTATGATTTATTTATGTTGTTTTCC
TTATAATTCAAGTTCTGATTTTTTATGTCCTTGTTACTATTTTCATTTAT
AAGCTAAATTTTGTTTGGTTTGTTTAATTTTCAGGTGATGAGCTTCTCTC
AGACTCATTCCCGTACAAGGAAATTGAAAATGGAATGCTGTGGGAAGTTG
AAGGCAAGTGGGTTGTTCAAGGGGCAGTGAACGTAGACATTGGGGCTAAC
CCTTCTGCAGAAGGCGGAGATGACGATGAAGGTGTCGATGACCAAGCTGT
CAAGGTTGTCGATATTGTGGACACCTTCAGGCTTCANGAAACAACTGCTT
TTGAA
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