FC923817

Overview
NameFC923817
Unique NameFC923817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923817 vs. ExPASy Swiss-Prot
Match: U195A_ARATH (UPF0195 protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 85/157 (54.14%), Postives = 113/157 (71.97%), Query Frame = 2
Query:   38 MTLGLINANPVVHAKKERVPRTEESHSH--SDDCVDPLEIYDFVRDIRDPEHPYXXXXXXXXXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE 502
            M  GLIN NP+++ KKER  RT+ S +   + + +D LEI+D +RDI+DPEHP             + VD++   + +TFTPT++HCSMA VIGLC+RVKL    P  +K+DI+VAPGSHA E+++NKQLNDKER+AAALENPNL ++VDECL S E
Sbjct:    1 MVSGLINENPIIYPKKERRLRTDTSITDELTPEPIDQLEIFDHIRDIKDPEHPNTLEDLRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKIDIRVAPGSHATEDALNKQLNDKERVAAALENPNLVEMVDECLPSEE 157          
BLAST of FC923817 vs. ExPASy Swiss-Prot
Match: FA96B_MOUSE (UPF0195 protein FAM96B OS=Mus musculus GN=Fam96b PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.471e-31
Identity = 66/148 (44.59%), Postives = 90/148 (60.81%), Query Frame = 2
Query:   50 LINANPVVHAKKERVPRTE-ESHSHSDDCVDPLEIYDFVRDIRDPEHPYXXXXXXXXXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 490
            L NANP+++ +    P T  E      D +D  EI+D +R I DPEHP             I V +    + + FTPTI HCSMA +IGL ++VKL    P  FK+D+ + PG+HA E +VNKQL DKER+AAALEN +L ++V++CL
Sbjct:   12 LENANPLIYERSGERPVTAGEEDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCL 159          
BLAST of FC923817 vs. ExPASy Swiss-Prot
Match: U195A_DROME (UPF0195 protein CG7949 OS=Drosophila melanogaster GN=CG7949 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.757e-31
Identity = 66/146 (45.21%), Postives = 93/146 (63.70%), Query Frame = 2
Query:   56 NANPVVHAK-KERVPRTEESHSHSDDCVDPLEIYDFVRDIRDPEHPYXXXXXXXXXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 490
            N NP V+ + KERV    E   +  D  D  EI+D +R+I DPEHP             I +++    + I+FTPTI HCSMA +IGL +RVKL    PP FK+ +++ PG+HA E +VNKQL DKER+AAALEN +L +++++C+
Sbjct:    7 NINPNVYDRIKERVLTANEEDENVPDPFDKREIFDLIRNINDPEHPLTLEELHVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKVTVEITPGTHASELAVNKQLADKERVAAALENNHLAEVINQCI 152          
BLAST of FC923817 vs. ExPASy Swiss-Prot
Match: FA96B_HUMAN (UPF0195 protein FAM96B OS=Homo sapiens GN=FAM96B PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.757e-31
Identity = 65/148 (43.92%), Postives = 90/148 (60.81%), Query Frame = 2
Query:   50 LINANPVVHAKKERVPRTE-ESHSHSDDCVDPLEIYDFVRDIRDPEHPYXXXXXXXXXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 490
            L NANP+++ +    P T  E      D +D  EI+D +R I DPEHP             + V +    + + FTPTI HCSMA +IGL ++VKL    P  FK+D+ + PG+HA E +VNKQL DKER+AAALEN +L ++V++CL
Sbjct:   12 LENANPLIYQRSGERPVTAGEEDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCL 159          
BLAST of FC923817 vs. ExPASy Swiss-Prot
Match: U195_CAEEL (UPF0195 protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.260e-30
Identity = 72/152 (47.37%), Postives = 91/152 (59.87%), Query Frame = 2
Query:   50 LINANPVVHAKKER---VPRTEESHSHSDDCVDPLEIYDFVRDIRDPEHPYXXXXXXXXXXXXITV--DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 490
            L NANP +   K R   V  TE   S  +D +D  EI+D +RDI DPEHPY            I V  DE+   + + FTPTI HCSMA +IGL +RVKL     P  K+ + + PGSH+ EES+N+QL DKER+AAA+EN  L   V+ECL
Sbjct:    6 LDNANPTLFDSKPRHRPVTGTERDES-VEDPIDSWEIFDLIRDINDPEHPYTLEQLNVVQEELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKVSVSITPGSHSTEESINRQLADKERVAAAMENQGLMHAVNECL 156          
BLAST of FC923817 vs. ExPASy Swiss-Prot
Match: FA96A_HUMAN (UPF0195 protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = 2
Query:  143 LEIYDFVRDIRDPEHPYXXXXXXXXXXXXITV---DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 490
            LE+YD +R IRDPE P             + V   +E+   ++I FTPT+ HCS+A +IGLCLRVKL+   P   KL+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   38 LEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
BLAST of FC923817 vs. ExPASy Swiss-Prot
Match: U195B_ARATH (UPF0195 protein At3g09380 OS=Arabidopsis thaliana GN=At3g09380 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 2
Query:   50 LINANPVVHAKKERVPRTEESHSHSDDCVDPLEIYDFVRDIRDPEHP-YXXXXXXXXXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSC 499
            L N NP+++ K+ R  RT++S +      D     + +RDI+DPEHP              + VD+    + ITFTPT+ HC +   IGLC+ VKL +  P  FK+D++VAPGSH  E +VNKQL DKER+ AALENP L  L+++ +  C
Sbjct:    5 LTNKNPIIYPKRTRRYRTDQSST------DEFSSTNRIRDIKDPEHPELSLEDLNVLTEESVEVDDHKSYVRITFTPTLPHCHLPTHIGLCILVKLVQSLPARFKVDVRVAPGSHDKETTVNKQLGDKERVTAALENPELVALLNKMMQVC 149          
BLAST of FC923817 vs. ExPASy Swiss-Prot
Match: FA96A_MOUSE (UPF0195 protein FAM96A OS=Mus musculus GN=Fam96a PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 2
Query:  143 LEIYDFVRDIRDPEHPYXXXXXXXXXXXXITV---DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 490
            LE+YD +R IRDPE P             + V   +E    ++I FTPT+ HCS+A +IGLCLRVKL+   P   KL+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   38 LEVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIKFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
BLAST of FC923817 vs. ExPASy Swiss-Prot
Match: FA96A_BOVIN (UPF0195 protein FAM96A OS=Bos taurus GN=FAM96A PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 2
Query:  143 LEIYDFVRDIRDPEHPYXXXXXXXXXXXXITV---DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 490
            LE+YD +R IRDPE P             + V   +E    ++I FTPT+ HCS+A +IGLCLRVKL+   P   KL+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   38 LEVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
BLAST of FC923817 vs. ExPASy Swiss-Prot
Match: FA96B_DICDI (UPF0195 protein FAM96B OS=Dictyostelium discoideum GN=fam96B PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 63/157 (40.13%), Postives = 92/157 (58.60%), Query Frame = 2
Query:   56 NANPVVHAKKERVPRTEES--------HSHSDDCVDPL---EIYDFVRDIRDPEHPYXXXXXXXXXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALE-NPNLRQLVDECL 490
            N NPV++   E     E++        +S  +D +D     EI+D VR I DPEHP             + ++ +   IL+ FTPT+ HCSMA +IGL ++ KL    P  FK+D+ V PGSH+ E SVNKQLNDKER++AAL+ + ++  +V+EC+
Sbjct:    4 NPNPVIYVDNENCKSFEDNENSFNSSRYSIEEDQIDEFDEQEIFDLVRSITDPEHPLTLEQLNVVRIENVNINLENSYILLYFTPTVPHCSMANLIGLSIKEKLARSLPKRFKVDVIVTPGSHSSESSVNKQLNDKERVSAALDTSSSILTIVNECI 160          
The following BLAST results are available for this feature:
BLAST of FC923817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
U195A_ARATH8.508e-4354.14UPF0195 protein At1g68310 OS=Arabidopsis thaliana ... [more]
FA96B_MOUSE7.471e-3144.59UPF0195 protein FAM96B OS=Mus musculus GN=Fam96b P... [more]
U195A_DROME9.757e-3145.21UPF0195 protein CG7949 OS=Drosophila melanogaster ... [more]
FA96B_HUMAN9.757e-3143.92UPF0195 protein FAM96B OS=Homo sapiens GN=FAM96B P... [more]
U195_CAEEL8.260e-3047.37UPF0195 protein F45G2.10 OS=Caenorhabditis elegans... [more]
FA96A_HUMAN1.010e-2748.74UPF0195 protein FAM96A OS=Homo sapiens GN=FAM96A P... [more]
U195B_ARATH1.319e-2742.38UPF0195 protein At3g09380 OS=Arabidopsis thaliana ... [more]
FA96A_MOUSE2.249e-2748.74UPF0195 protein FAM96A OS=Mus musculus GN=Fam96a P... [more]
FA96A_BOVIN2.249e-2748.74UPF0195 protein FAM96A OS=Bos taurus GN=FAM96A PE=... [more]
FA96B_DICDI7.236e-2640.13UPF0195 protein FAM96B OS=Dictyostelium discoideum... [more]

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Properties
Property NameValue
Genbank descriptionC31709C03EF StrClemenN Citrus clementina cDNA clone C31709C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923817 ID=FC923817; Name=FC923817; organism=Citrus clementina; type=EST; length=707bp
CCAAAACATTAAAACTTGGAAGAAAAGAGAGGAAAAGATGACTCTTGGTC
TGATCAATGCGAACCCGGTGGTTCACGCTAAGAAGGAAAGGGTGCCCCGC
ACCGAAGAGTCCCACTCTCACTCCGACGACTGCGTTGATCCCCTCGAGAT
ATATGATTTTGTGAGAGATATAAGAGATCCAGAGCATCCTTATTCTCTAG
AGCAGCTGAGCGTTCTATCTGAGGAATCGATCACTGTTGACGAGAAGCTT
GGGCGTATTTTGATAACTTTCACTCCCACTATTCAGCATTGCAGTATGGC
GGCGGTGATTGGTCTCTGCTTGAGGGTTAAACTGAAAGAATTTTTCCCTC
CGCATTTCAAGCTTGACATCAAAGTTGCTCCTGGATCCCATGCTGATGAA
GAATCAGTTAATAAGCAGTTGAATGATAAAGAAAGAATTGCAGCTGCTTT
GGAGAATCCTAACCTTCGCCAACTTGTTGATGAGTGTCTCTATTCCTGTG
AAATTTGAGCAAGTGCACTCAGCTGAGCAAAAACCACTGTACAGAGTAAA
CAGCAGCAGTATTGGGGTGTATGTAATAAGAAATGTTGTTGTAAAATGAA
TTTGATATAATGACTCTACTGTACCTCTGTTGTGTGCCTCCTCCATTTTT
GTTGGCTTTATTGATCAATTTATGAATCCTTTTTACAAAAAAAAAAAAAA
AAAAAAA
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