FC923827
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923827 vs. ExPASy Swiss-Prot
Match: TOP1_ARATH (DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 6.033e-49 Identity = 96/123 (78.05%), Postives = 105/123 (85.37%), Query Frame = 3 Query: 3 DTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVISVQTKRLLL 371 DTVGCCTLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE VYKAIGQFQ GK + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV KI V K + + Sbjct: 651 DTVGCCTLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAI 773 HSP 2 Score: 186.808 bits (473), Expect = 9.632e-47 Identity = 93/121 (76.86%), Postives = 107/121 (88.43%), Query Frame = 2 Query: 341 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNXKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 703 YQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL + SDGK+ R+L P A E+K+AQ + KIEKMERDM TKEDLKTVALGTSKINYLDPRITVAWCK Sbjct: 764 YQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL-EGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCK 883
BLAST of FC923827 vs. ExPASy Swiss-Prot
Match: TOP1_CAEEL (DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 2.651e-47 Identity = 68/124 (54.84%), Postives = 79/124 (63.71%), Query Frame = 3 Query: 3 DTVGCCTLKVGNVECIPPNKL------------KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKI 335 DTVGCC+L+V +++ KL +FDFLGKDSI+Y N V VE VYK + F GK +DDLFD+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Sbjct: 542 DTVGCCSLRVEHIKLFDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKI 665 HSP 2 Score: 92.4337 bits (228), Expect = 2.651e-47 Identity = 48/121 (39.67%), Postives = 69/121 (57.02%), Query Frame = 2 Query: 341 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNXKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 703 Y RAN++VAI+CNHQR VSK M +L +KI+D K +K+ L K R E ++K + +++K++ K++ K +ALGTSK+NY+DPRITVAWCK Sbjct: 668 YNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKKKEVKEAEAAL----------------KSARGAEKEKAQKKYDRLKEQLKKLKISRTDKDENKQIALGTSKLNYIDPRITVAWCK 772
BLAST of FC923827 vs. ExPASy Swiss-Prot
Match: TOP1_CERAE (DNA topoisomerase 1 OS=Cercopithecus aethiops GN=TOP1 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.694e-46 Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = 3 Query: 3 DTVGCCTLKVGNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKI 335 DTVGCC+L+V ++ P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D ++ KI Sbjct: 502 DTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKI 618 HSP 2 Score: 96.6709 bits (239), Expect = 1.694e-46 Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 2 Query: 341 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNXKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 703 Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK Sbjct: 621 YNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCK 736
BLAST of FC923827 vs. ExPASy Swiss-Prot
Match: TOP1_HUMAN (DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 2.208e-46 Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = 3 Query: 3 DTVGCCTLKVGNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKI 335 DTVGCC+L+V ++ P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D ++ KI Sbjct: 500 DTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKI 616 HSP 2 Score: 96.2857 bits (238), Expect = 2.208e-46 Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 2 Query: 341 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNXKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 703 Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK Sbjct: 619 YNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCK 734
BLAST of FC923827 vs. ExPASy Swiss-Prot
Match: TOP1_RAT (DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.887e-46 Identity = 61/117 (52.14%), Postives = 77/117 (65.81%), Query Frame = 3 Query: 3 DTVGCCTLKVGNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKI 335 DTVGCC+L+V ++ P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Sbjct: 502 DTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKI 618 HSP 2 Score: 97.4413 bits (241), Expect = 4.887e-46 Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 2 Query: 341 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNXKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 703 Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK Sbjct: 621 YNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARKDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCK 736
BLAST of FC923827 vs. ExPASy Swiss-Prot
Match: TOP1_MOUSE (DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 6.369e-46 Identity = 61/117 (52.14%), Postives = 77/117 (65.81%), Query Frame = 3 Query: 3 DTVGCCTLKVGNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKI 335 DTVGCC+L+V ++ P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Sbjct: 502 DTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKI 618 HSP 2 Score: 97.0561 bits (240), Expect = 6.369e-46 Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 2 Query: 341 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNXKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 703 Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK Sbjct: 621 YNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCK 736
BLAST of FC923827 vs. ExPASy Swiss-Prot
Match: TOP1M_HUMAN (DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.841e-45 Identity = 64/117 (54.70%), Postives = 77/117 (65.81%), Query Frame = 3 Query: 3 DTVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKI 335 DTVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Sbjct: 336 DTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKI 452 HSP 2 Score: 87.4261 bits (215), Expect = 1.841e-45 Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 2 Query: 341 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNXKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 703 Y RAN+ VAI+CNHQR T M L KI+ K + + R +L RA+ DGK + L E R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCK Sbjct: 455 YNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARAEHKA---QGDGKSRSVL--EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCK 570
BLAST of FC923827 vs. ExPASy Swiss-Prot
Match: TOP1_CRIGR (DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 3.120e-45 Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 3 Query: 3 DTVGCCTLKVGNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKI 335 DTV CC+L+V ++ P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Sbjct: 502 DTVSCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKI 618 HSP 2 Score: 97.0561 bits (240), Expect = 3.120e-45 Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 2 Query: 341 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNXKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 703 Y RAN+ VAI+CNHQR KT M L KI+ K L D R DL AK +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK Sbjct: 621 YNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSAK-ADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCK 736
BLAST of FC923827 vs. ExPASy Swiss-Prot
Match: TOP1_DICDI (DNA topoisomerase 1 OS=Dictyostelium discoideum GN=top1 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.985e-45 Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 3 Query: 3 DTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK 302 DTVGCC+L+V +++ N + DFLGKDS++Y+NTV++ YK + F GKK D LFD L +LN HLK+ M GL+AKVFRTYNASITL L+K Sbjct: 593 DTVGCCSLRVEHIKLESNNTITLDFLGKDSMRYLNTVQIREDAYKVLKTFVKGKKPTDLLFDSLTVTQLNNHLKKQMTGLSAKVFRTYNASITLQKELDK 692 HSP 2 Score: 91.6633 bits (226), Expect = 8.985e-45 Identity = 58/157 (36.94%), Postives = 84/157 (53.50%), Query Frame = 2 Query: 341 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGK------------PPLM-------KDSDGKR--------------KRNLAPEA---LERKMAQTNXKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 703 Y R N+EVAI+CNHQ+ K + MS++ EKI++L+ + R+ + + K + P L+ KD D ++ K P+A ++ K+A+ +I+K E K++LKTVALGTSKINYLDPRITVAWCK Sbjct: 708 YNRCNREVAILCNHQKAPPKNLAETMSKIDEKIQELRDLQDLCRIKIGKTPKSQQEDIESREAERLPKLIQLAITNKKDKDKEKTDKEISFDVKAAFEKSRTLPDAKGKIKEKIAKYEEQIKKQEILKTGKDELKTVALGTSKINYLDPRITVAWCK 864
BLAST of FC923827 vs. ExPASy Swiss-Prot
Match: TOP1M_PANTR (DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 9.020e-45 Identity = 63/117 (53.85%), Postives = 77/117 (65.81%), Query Frame = 3 Query: 3 DTVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKI 335 DTVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K D+LFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Sbjct: 336 DTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMESKGPRDNLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKI 452 HSP 2 Score: 87.4261 bits (215), Expect = 9.020e-45 Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 2 Query: 341 YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNXKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCK 703 Y RAN+ VAI+CNHQR T M L KI+ K + + R +L RA+ DGK + L E R + + ++ ++ KE+ K VALGTSK+NYLDPRI++AWCK Sbjct: 455 YNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARAEHKA---QGDGKSRSVL--EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAWCK 570 The following BLAST results are available for this feature:
BLAST of FC923827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923827 ID=FC923827; Name=FC923827; organism=Citrus clementina; type=EST; length=704bpback to top |