FC923829

Overview
NameFC923829
Unique NameFC923829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923829 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.296e-59
Identity = 122/207 (58.94%), Postives = 148/207 (71.50%), Query Frame = 3
Query:  105 MKTFRVXXXXXXXXXSPLPQVARCQSDSETGVAETEGGDLGIVGEDAQDFG-------DGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIEPVFLVTLGIALLVL 704
            M   RV         SPL QVARCQSD+E   +  +     +VGE+  D         D   S  PGV+TVC+FPKNSA++V AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT    NNA++P S QATFPYIFAVS++LQPG FDLVG I+Y+V+  PYQS FYNGTIEVVESGG +S E VFL+TLGI LL+L
Sbjct:    1 MMNLRVLFLALLLLASPLLQVARCQSDAEDHSSLVDD----VVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLL 203          
BLAST of FC923829 vs. ExPASy Swiss-Prot
Match: SSRA_DICDI (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 3
Query:  270 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIEPVFLVTLGIALL 698
            +P   V    IFP N  +  AAG   E+LVG  N+ + ++N+  I AS++ P D S+ +QN T   F  A V     AT  Y F  S++L+P  F L+ S+ Y+     +  TF+N TI + E      ++  FL+ LG+  +
Sbjct:   34 TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTINITEKETSFDMDSFFLILLGLGFV 175          
The following BLAST results are available for this feature:
BLAST of FC923829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SSRA_ARATH1.296e-5958.94Translocon-associated protein subunit alpha OS=Ara... [more]
SSRA_DICDI1.959e-1533.57Translocon-associated protein subunit alpha OS=Dic... [more]
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Properties
Property NameValue
Genbank descriptionC31709D03EF StrClemenN Citrus clementina cDNA clone C31709D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923829 ID=FC923829; Name=FC923829; organism=Citrus clementina; type=EST; length=704bp
GACTGTTTGACAAGGGTAGCTTTGGCGGTGTATTCACTGATCACCTTCAT
TCAATTCCAAAGCGGCGTCGTGTCAATTCAAACAACAAACAAACAACCAT
GGAGATGAAGACGTTTAGGGTTTTCTTCTTCGCTCTCCTCCTTCTAGCCT
CTCCTCTTCCTCAAGTTGCTAGGTGTCAATCGGATTCGGAAACGGGAGTT
GCAGAGACCGAAGGGGGTGATCTTGGGATTGTTGGTGAGGATGCTCAAGA
TTTTGGTGATGGGACTTTTAGCCCTGCTCCAGGAGTGGATACTGTCTGTA
TCTTCCCTAAAAATAGCGCCCGAGTGGTGGCTGCTGGAGAAGAAACTGAA
CTACTGGTTGGGATGAAAAATGATGGGGAGTCAAGCGTGAATGTGATTGC
AATTCAGGCCAGTGTTCATCTCCCTTTTGATCACAGTCTTTTGGTTCAAA
ATCTCACTGGACAGGCCTTTAACAATGCAACTGTGCCGGTATCAGCTCAG
GCTACCTTTCCATACATTTTTGCTGTCAGCAAGTTCTTGCAGCCTGGAAC
TTTTGATCTTGTGGGCTCCATTGTTTATGAGGTAGACCAGCATCCTTACC
AAAGCACCTTCTACAATGGTACCATTGAAGTTGTTGAATCTGGTGGGTTC
ATCAGCATTGAGCCCGTTTTTCTTGTTACCCTTGGGATTGCGCTTCTCGT
CCTT
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