FC923832

Overview
NameFC923832
Unique NameFC923832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923832 vs. ExPASy Swiss-Prot
Match: PDCD2_BOVIN (Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.312e-12
Identity = 30/62 (48.39%), Postives = 36/62 (58.06%), Query Frame = 3
Query:  492 PVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPI 677
            P  LGF+E   + W L    FPSK GG PAWL    LP      C +CG P+ F+LQVYAP+
Sbjct:    8 PAELGFVEAAPS-WRLRSEQFPSKVGGRPAWLSAAGLPGPPELACPLCGRPMAFLLQVYAPL 68          

HSP 2 Score: 25.0238 bits (53), Expect = 7.312e-12
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = 2
Query:  683 KGSTFHRTLFLFMCPSMAC 739
            +   FHR LFLF C +  C
Sbjct:   71 RADAFHRCLFLFCCRTPPC 89          
BLAST of FC923832 vs. ExPASy Swiss-Prot
Match: PDCD2_HUMAN (Programmed cell death protein 2 OS=Homo sapiens GN=PDCD2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 35/80 (43.75%), Postives = 43/80 (53.75%), Query Frame = 3
Query:  492 PVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKDRHFIVRYFCSCVHQ 731
            PV LGF E     W L    FPSK GG PAWL    LP  ++  C++CG PL F+LQVYAP+  +   F    F  C  +
Sbjct:    8 PVELGFAESAP-AWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSFLLQVYAPLPGRPDAFHRCIFLFCCRE 86          
BLAST of FC923832 vs. ExPASy Swiss-Prot
Match: PDCD2_MOUSE (Programmed cell death protein 2 OS=Mus musculus GN=Pdcd2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 36/80 (45.00%), Postives = 42/80 (52.50%), Query Frame = 3
Query:  492 PVTLGFLEKPKNRWSLLRHLFPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAPIIEKDRHFIVRYFCSCVHQ 731
            PV LGF E+    W L    FPSK GG PAWL    LP   +  C  CG PL F+LQVYAP+  +D  F    F  C  +
Sbjct:    8 PVELGFAEEAP-AWRLRSEQFPSKVGGRPAWLGLAELPGPGALACARCGRPLAFLLQVYAPLPGRDDAFHRSLFLFCCRE 86          
The following BLAST results are available for this feature:
BLAST of FC923832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PDCD2_BOVIN7.312e-1248.39Programmed cell death protein 2 OS=Bos taurus GN=P... [more]
PDCD2_HUMAN4.373e-1143.75Programmed cell death protein 2 OS=Homo sapiens GN... [more]
PDCD2_MOUSE9.743e-1145.00Programmed cell death protein 2 OS=Mus musculus GN... [more]
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Properties
Property NameValue
Genbank descriptionC31709D06EF StrClemenN Citrus clementina cDNA clone C31709D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923832 ID=FC923832; Name=FC923832; organism=Citrus clementina; type=EST; length=761bp
GGAATCAGTTTTTGAATAAGTCGAGAATGTGTGGGATAAGTGTTTTTGTT
GAACTTCAAAATATCTGTTCTGTGAGGATTTAATAGAGTATTTTCATATT
TTCGCAGATTTTTTTTTAAGCATATATGTGTAATATTAAAGGCGAAAGCA
TTTTAGCTGATTGGGGGTATATATATCCCACGCAATTCTGTCTGGTTGTA
GGGTATTGCTAAACCCTAACGTTTATCACGACCAGCAGTAAGAGAGCAGA
GCAAAATCAGTTTAAACTTGAATTATCAATCAACGATTATAAAGATATTT
ATCTTTGATCATACAACTCACCTATCAAGCCGAAGAAAATGGAAAGTGGT
GCCAACGGAGATTCGATAGAGAAATTGCAGGGGCTGCAAATTACCCCTCT
AGATGATGACGATGAAGAAGAACGAGAAATGGTGGCCTATGAATACGAGG
ATGACGATGAAGACGACGGCGAAGACGAGGAAGAACAAGAACCGGTGACG
CTAGGTTTTCTAGAGAAGCCAAAAAATCGCTGGTCTCTTCTTCGCCATTT
ATTTCCCAGCAAAGCTGGAGGACCACCGGCCTGGCTGGATCCAATTAATT
TACCTACAGGAAGGTCCTGCCTTTGTGATATGTGTGGAGAACCTTTACAG
TTCGTGCTTCAGGTTTATGCACCAATTATTGAAAAGGATCGACATTTCAT
CGTACGTTATTTTTGTTCATGTGTCCATCAATGGCTTGTCTTCGTCGAGA
TCACATGAGCA
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