FC923834

Overview
NameFC923834
Unique NameFC923834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: DHR12_BOVIN (Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.021e-40
Identity = 88/204 (43.14%), Postives = 129/204 (63.24%), Query Frame = 3
Query:   48 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHL-TDDLEFNSGSFDGMEQYARNK 656
            +R AA+   G   +TK+G++  SK+F P+D++ ++ G+  +VTG N+GIG ATA  +A RG TV++VCR   + E A + I  ++GN+N+ L + DLS    +  F   F  +   ++VL+NNAG + N R +T +G E NFA N LG Y +T +++P+LEK   D RVITVSSGGM    L TDD +    +FDG   YA+NK
Sbjct:    4 YRSAAWFAKGLREYTKSGYESASKDFVPDDLEVQVPGRAFMVTGGNSGIGKATAMEIAKRGGTVHLVCRDHSRAEGAKAEIIRESGNQNIFLHIVDLSLPKSVWKFVENFK-QEHTLNVLINNAGCMVNKRELTEDGLEKNFATNTLGVYVLTTALIPVLEK-EHDPRVITVSSGGMLVQKLNTDDPQSERTAFDGTMVYAQNK 205          
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: DHR12_HUMAN (Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.448e-40
Identity = 89/204 (43.63%), Postives = 126/204 (61.76%), Query Frame = 3
Query:   48 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHL-TDDLEFNSGSFDGMEQYARNK 656
            +R   +   G   +TK+G++   K+F P D++ +I G+  +VTG N+GIG ATA  +A RG TV++VCR +   E A   I  ++GN+N+ L + DLS   +I  F   F  ++K +HVL+NNAG + N R +T +G E NFA N LG Y +T  ++P+LEK   D RVITVSSGGM    L T+DL+     FDG   YA+NK
Sbjct:    4 YRSVVWFAKGLREYTKSGYESACKDFVPHDLEVQIPGRVFLVTGGNSGIGKATALEIAKRGGTVHLVCRDQAPAEDARGEIIRESGNQNIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNKRELTEDGLEKNFAANTLGVYILTTGLIPVLEK-EHDPRVITVSSGGMLVQKLNTNDLQSERTPFDGTMVYAQNK 205          
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.372e-27
Identity = 71/166 (42.77%), Postives = 101/166 (60.84%), Query Frame = 3
Query:  147 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHLTDDLEFNSGSFDGMEQY 644
            +I GK  V+TGAN GIG  TA  LA RGA VY+ CR   KGE+A S IR+ T N  V +   DLS    I++FA RF  + K +H+L+NNAG++      T++GFE +F VN LG + +T  ++  L+++AP ARV+ +SS     AHL   + F+     G ++Y
Sbjct:   36 QIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESAP-ARVVNLSS----IAHLIGKIRFH--DLQGQKRY 194          
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.701e-26
Identity = 66/163 (40.49%), Postives = 101/163 (61.96%), Query Frame = 3
Query:  147 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSS-----GGMYTAHLTDDLEFNSG 620
            ++ GK  VVTGAN GIG  TA+ LA RGA VY+ CR  EKGE     I++ TGN+ V +   DLS    I++FA  F  + K +HVL+NNAG++      T++GFE++  VN LG + +T  ++  L+++AP +R++ VSS     G ++  +L  +  +N+G
Sbjct:   38 QLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNVSSLAHHLGRIHFHNLQGEKFYNAG 199          
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.133e-25
Identity = 66/173 (38.15%), Postives = 96/173 (55.49%), Query Frame = 3
Query:  141 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHLT-DDLEFNSGSFDGMEQYARNK 656
            +A I GK  +VTGAN GIG  TA  LA RG  V + CR  EK E A   IR +T N  V  E  DL+S+  I+ FA +   + + V +LVNNA ++      T +GFE+ F VN LG + +T  ++  L+ +AP +R+I +SS      H+  +DL +    +D    Y ++K
Sbjct:   33 KATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHIDFEDLNWQMKKYDTKAAYCQSK 204          
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.092e-25
Identity = 59/149 (39.60%), Postives = 94/149 (63.09%), Query Frame = 3
Query:  147 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHL 593
            ++ GK  +VTGAN GIG  TA+ LA RGA VY+ CR  +KGE A   I++ TGN  V +   DL+    I++FA  F  + K +H+L+NNAG++      T++GFE++  VN LG + +T  ++  L+++AP +R++ +SS G +   +
Sbjct:   35 QLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNLSSLGHHLGRI 182          
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.980e-25
Identity = 64/173 (36.99%), Postives = 99/173 (57.23%), Query Frame = 3
Query:  141 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHLT-DDLEFNSGSFDGMEQYARNK 656
            +A I GK  +VTGAN GIG  TA  LA RG  + + CR  EK E A   IR +T N +V+    DL+S+  I+ FA +   + + V +L+NNAG++      T +GFE+ F VN LG + +T  ++  L+ +AP +R+I +SS      H+  DDL + +  ++    Y ++K
Sbjct:   33 KATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHIDFDDLNWQTRKYNTKAAYCQSK 204          
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.191e-24
Identity = 64/141 (45.39%), Postives = 88/141 (62.41%), Query Frame = 3
Query:  147 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSS 569
            ++ GK  V+TGAN GIG  TA  LASRGA VY+ CR   KGE+A S IR  T N  V +   DLS    I++FA  F  + K +H+L+NNAG++      T++GFE +  VN LG + +T  ++  L+ +AP ARV+ VSS
Sbjct:   36 QLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKVSAP-ARVVNVSS 175          
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 3
Query:  156 GKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSS 569
            GK  V+TGAN GIG  TA  LA RGA VY+ CR   KGE+A S I++ T N  V +   DLS    I++FA  F  + K +H+L+NNAG++      T++GFE + AVN LG + +T  ++  L+++AP ARV+ +SS
Sbjct:   39 GKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLLLGRLKESAP-ARVVNLSS 175          
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 63/167 (37.72%), Postives = 99/167 (59.28%), Query Frame = 3
Query:  168 VVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAP---DARVITVSSGGMYTAHLT-DDLEFNSGSFDGMEQYARNK 656
            +VTG   GIGY+TA+ LA  G  V +   +  K +  +S I+ +T N+ V    CDL+S+T I+ F  +F +K  P+HVL+NNAG++   +  T +GFE +F +N LG + +T  ++  L+++      ARV+TVSS   Y A L  DDL+ +S  +     YA++K
Sbjct:   47 IVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHSARVVTVSSATHYVAELNMDDLQ-SSACYSPHAAYAQSK 212          
The following BLAST results are available for this feature:
BLAST of FC923834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
DHR12_BOVIN2.021e-4043.14Dehydrogenase/reductase SDR family member 12 OS=Bo... [more]
DHR12_HUMAN3.448e-4043.63Dehydrogenase/reductase SDR family member 12 OS=Ho... [more]
RDH12_MOUSE4.372e-2742.77Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ... [more]
RDH11_HUMAN3.701e-2640.49Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 ... [more]
RDH13_MOUSE3.133e-2538.15Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 ... [more]
RDH11_MOUSE4.092e-2539.60Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 ... [more]
RDH13_HUMAN6.980e-2536.99Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ... [more]
RDH12_HUMAN1.191e-2445.39Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 ... [more]
RDH12_BOVIN3.464e-2444.93Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE... [more]
DHRSX_HUMAN7.717e-2437.72Dehydrogenase/reductase SDR family member on chrom... [more]

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Properties
Property NameValue
Genbank descriptionC31709D08EF StrClemenN Citrus clementina cDNA clone C31709D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923834 ID=FC923834; Name=FC923834; organism=Citrus clementina; type=EST; length=658bp
GGAGTCAGATTTCACCCACACAACTCTCAATGTTCCTCCTCAAAAAATGG
AGAGTTGCAGCTTTTGGTGTGTATGGCTACATGAATTTCACCAAAAACGG
CTTCAAAGAACACTCAAAAAATTTCAAACCTGAAGATATGCAAGCTCGCA
TAGAAGGGAAAAATTGCGTAGTTACAGGAGCAAATGCTGGCATTGGTTAT
GCTACCGCTGAGGGTCTTGCTTCTCGTGGGGCCACTGTCTATATGGTTTG
TCGCAGTAAAGAGAAAGGAGAAACTGCTCTTTCTGCAATTCGGTCTAAGA
CAGGCAATGAAAATGTTCATCTGGAGCTGTGCGATCTTTCATCTATCACC
GAGATCAAGTCTTTTGCGAACAGGTTTTCACTAAAGAATAAGCCAGTTCA
TGTTTTGGTTAACAATGCTGGCTTGCTTGAAAATAACCGATTAATCACAT
CTGAAGGATTTGAGTTAAACTTTGCTGTAAATGTATTGGGCACATACACC
ATAACAGAATCAATGGTTCCTTTGCTGGAGAAAGCTGCACCTGATGCTCG
AGTGATCACAGTTTCCTCTGGAGGAATGTATACAGCTCACTTAACTGATG
ATCTAGAGTTTAACAGTGGAAGCTTTGATGGGATGGAACAATATGCTCGA
AACAAGCG
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