FC923834
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: DHR12_BOVIN (Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 2.021e-40 Identity = 88/204 (43.14%), Postives = 129/204 (63.24%), Query Frame = 3 Query: 48 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHL-TDDLEFNSGSFDGMEQYARNK 656 +R AA+ G +TK+G++ SK+F P+D++ ++ G+ +VTG N+GIG ATA +A RG TV++VCR + E A + I ++GN+N+ L + DLS + F F + ++VL+NNAG + N R +T +G E NFA N LG Y +T +++P+LEK D RVITVSSGGM L TDD + +FDG YA+NK Sbjct: 4 YRSAAWFAKGLREYTKSGYESASKDFVPDDLEVQVPGRAFMVTGGNSGIGKATAMEIAKRGGTVHLVCRDHSRAEGAKAEIIRESGNQNIFLHIVDLSLPKSVWKFVENFK-QEHTLNVLINNAGCMVNKRELTEDGLEKNFATNTLGVYVLTTALIPVLEK-EHDPRVITVSSGGMLVQKLNTDDPQSERTAFDGTMVYAQNK 205
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: DHR12_HUMAN (Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2) HSP 1 Score: 164.851 bits (416), Expect = 3.448e-40 Identity = 89/204 (43.63%), Postives = 126/204 (61.76%), Query Frame = 3 Query: 48 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHL-TDDLEFNSGSFDGMEQYARNK 656 +R + G +TK+G++ K+F P D++ +I G+ +VTG N+GIG ATA +A RG TV++VCR + E A I ++GN+N+ L + DLS +I F F ++K +HVL+NNAG + N R +T +G E NFA N LG Y +T ++P+LEK D RVITVSSGGM L T+DL+ FDG YA+NK Sbjct: 4 YRSVVWFAKGLREYTKSGYESACKDFVPHDLEVQIPGRVFLVTGGNSGIGKATALEIAKRGGTVHLVCRDQAPAEDARGEIIRESGNQNIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNKRELTEDGLEKNFAANTLGVYILTTGLIPVLEK-EHDPRVITVSSGGMLVQKLNTNDLQSERTPFDGTMVYAQNK 205
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.372e-27 Identity = 71/166 (42.77%), Postives = 101/166 (60.84%), Query Frame = 3 Query: 147 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHLTDDLEFNSGSFDGMEQY 644 +I GK V+TGAN GIG TA LA RGA VY+ CR KGE+A S IR+ T N V + DLS I++FA RF + K +H+L+NNAG++ T++GFE +F VN LG + +T ++ L+++AP ARV+ +SS AHL + F+ G ++Y Sbjct: 36 QIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESAP-ARVVNLSS----IAHLIGKIRFH--DLQGQKRY 194
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 3.701e-26 Identity = 66/163 (40.49%), Postives = 101/163 (61.96%), Query Frame = 3 Query: 147 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSS-----GGMYTAHLTDDLEFNSG 620 ++ GK VVTGAN GIG TA+ LA RGA VY+ CR EKGE I++ TGN+ V + DLS I++FA F + K +HVL+NNAG++ T++GFE++ VN LG + +T ++ L+++AP +R++ VSS G ++ +L + +N+G Sbjct: 38 QLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNVSSLAHHLGRIHFHNLQGEKFYNAG 199
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.133e-25 Identity = 66/173 (38.15%), Postives = 96/173 (55.49%), Query Frame = 3 Query: 141 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHLT-DDLEFNSGSFDGMEQYARNK 656 +A I GK +VTGAN GIG TA LA RG V + CR EK E A IR +T N V E DL+S+ I+ FA + + + V +LVNNA ++ T +GFE+ F VN LG + +T ++ L+ +AP +R+I +SS H+ +DL + +D Y ++K Sbjct: 33 KATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHIDFEDLNWQMKKYDTKAAYCQSK 204
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 4.092e-25 Identity = 59/149 (39.60%), Postives = 94/149 (63.09%), Query Frame = 3 Query: 147 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHL 593 ++ GK +VTGAN GIG TA+ LA RGA VY+ CR +KGE A I++ TGN V + DL+ I++FA F + K +H+L+NNAG++ T++GFE++ VN LG + +T ++ L+++AP +R++ +SS G + + Sbjct: 35 QLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNLSSLGHHLGRI 182
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 6.980e-25 Identity = 64/173 (36.99%), Postives = 99/173 (57.23%), Query Frame = 3 Query: 141 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSSGGMYTAHLT-DDLEFNSGSFDGMEQYARNK 656 +A I GK +VTGAN GIG TA LA RG + + CR EK E A IR +T N +V+ DL+S+ I+ FA + + + V +L+NNAG++ T +GFE+ F VN LG + +T ++ L+ +AP +R+I +SS H+ DDL + + ++ Y ++K Sbjct: 33 KATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHIDFDDLNWQTRKYNTKAAYCQSK 204
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3) HSP 1 Score: 113.235 bits (282), Expect = 1.191e-24 Identity = 64/141 (45.39%), Postives = 88/141 (62.41%), Query Frame = 3 Query: 147 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSS 569 ++ GK V+TGAN GIG TA LASRGA VY+ CR KGE+A S IR T N V + DLS I++FA F + K +H+L+NNAG++ T++GFE + VN LG + +T ++ L+ +AP ARV+ VSS Sbjct: 36 QLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKVSAP-ARVVNVSS 175
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24 Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 3 Query: 156 GKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAPDARVITVSS 569 GK V+TGAN GIG TA LA RGA VY+ CR KGE+A S I++ T N V + DLS I++FA F + K +H+L+NNAG++ T++GFE + AVN LG + +T ++ L+++AP ARV+ +SS Sbjct: 39 GKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLLLGRLKESAP-ARVVNLSS 175
BLAST of FC923834 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24 Identity = 63/167 (37.72%), Postives = 99/167 (59.28%), Query Frame = 3 Query: 168 VVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKNKPVHVLVNNAGLLENNRLITSEGFELNFAVNVLGTYTITESMVPLLEKAAP---DARVITVSSGGMYTAHLT-DDLEFNSGSFDGMEQYARNK 656 +VTG GIGY+TA+ LA G V + + K + +S I+ +T N+ V CDL+S+T I+ F +F +K P+HVL+NNAG++ + T +GFE +F +N LG + +T ++ L+++ ARV+TVSS Y A L DDL+ +S + YA++K Sbjct: 47 IVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHSARVVTVSSATHYVAELNMDDLQ-SSACYSPHAAYAQSK 212 The following BLAST results are available for this feature:
BLAST of FC923834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923834 ID=FC923834; Name=FC923834; organism=Citrus clementina; type=EST; length=658bpback to top |