FC923835

Overview
NameFC923835
Unique NameFC923835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923835 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 63/209 (30.14%), Postives = 99/209 (47.37%), Query Frame = 2
Query:    2 LDIYNCDNIRTLTVEEGIQCXXXXXXXXXXXXEDLVIWECPSLTCIFSKNELPATLESLEVGNLP-PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKA-LPKGLHNLSTLQYLTIGGA---LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVS 613
            L I +C++ +T ++  G+              E L I +CP+L             E+   G LP P L S+ ++ C KL+ + E+L   TSL ++ I  C  + + P GG P + LRTL I  C +L   +  GL +L  L+ L I G    + S  EE  LP ++  L+I    E  K++    +GFH   ++  + I GCD   +S
Sbjct: 1193 LSIRDCESFKTFSIHAGL-------GDDRIALESLEIRDCPNL-------------ETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFP-SNLRTLCISLCDKLTPRIEWGLRDLENLRNLEIDGGNEDIESFPEEGLLPKSVFSLRIS-RFENLKTL--NRKGFHDTKAIETMEISGCDKLQIS 1377          

HSP 2 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 59/174 (33.91%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  188 NLPPSLKSLRVNFCSKLELIAERL---DNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGALPSLE--EEDGLPTNLHFLKIEGNMEIWKSMIERGR-GFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASXTSLTIFSF 691
            +L P L+SL +  C   +  +      D+  +LE++ I +C NL +FP+GGLP  KL ++ + +CK+L+ALP+ L  L++L  L I    P +E     G P+NL  L I     +   +  R   G     +LR L I G ++D+ SFP E         LP S  SL I  F
Sbjct: 1185 SLFPKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFI-IKCPEIETIPGGGFPSNLRTLCI----SLCDKLTPRIEWGLRDLENLRNLEIDGGNEDIESFPEEGL-------LPKSVFSLRISRF 1346          
The following BLAST results are available for this feature:
BLAST of FC923835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DRL21_ARATH5.400e-1330.14Putative disease resistance protein At3g14460 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC31709D09EF StrClemenN Citrus clementina cDNA clone C31709D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923835 ID=FC923835; Name=FC923835; organism=Citrus clementina; type=EST; length=714bp
GTTGGATATTTACAATTGCGATAATATAAGGACTTTGACAGTGGAAGAGG
GCATCCAGTGTAGCAGCAGCAGCAGAAGGTACACCTCATATCTTCTTGAG
GACTTAGTTATTTGGGAATGTCCATCATTGACATGTATATTTTCAAAAAA
CGAGTTACCTGCCACGCTTGAGTCCCTTGAAGTTGGCAATCTACCTCCGT
CTCTTAAGTCCCTTCGTGTTAATTTTTGTTCAAAGCTGGAGTTAATAGCA
GAAAGGTTGGACAACAACACATCTCTTGAAACAATCAGTATTAGTAATTG
TGAAAATCTGGTGTCCTTTCCCGAAGGGGGATTGCCTTGTGCGAAACTCA
GGACGCTGAAGATATATGATTGTAAGAGACTAAAGGCCTTACCCAAGGGA
TTGCACAATCTGAGCACTCTTCAATACTTAACAATAGGAGGTGCGCTTCC
AAGCCTTGAAGAAGAAGATGGCCTTCCCACCAACCTTCATTTTCTGAAGA
TTGAGGGTAATATGGAGATTTGGAAGTCAATGATTGAGCGGGGCCGGGGA
TTTCACAGATTCTCCTCTCTGCGAGAACTCATAATCAGAGGATGTGATGA
CGACATGGTGTCATTTCCACTAGAGGACAAAAGATTAGGGACCGCGCTTC
CTCTTCCTGCCTCTCNTACGTCTCTGACAATTTTCAGTTTTCCAGTCTGG
ACGCCTATCTTCTC
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