FC923836

Overview
NameFC923836
Unique NameFC923836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923836 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.384e-25
Identity = 63/80 (78.75%), Postives = 69/80 (86.25%), Query Frame = 3
Query:   24 QLQTQAAEQFKVPPPNTGNVASKPESSAMAQDDE-EVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 260
            QLQTQAAEQFK P  N  +V  KPESS  AQ+DE EVD+TGVEPKDIELVMTQAGV R++AVKALKAADGDIVSAIM+LT
Sbjct:  127 QLQTQAAEQFKAP--NLSHVTMKPESSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAVKALKAADGDIVSAIMDLT 204          
BLAST of FC923836 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.998e-24
Identity = 63/81 (77.78%), Postives = 67/81 (82.72%), Query Frame = 3
Query:   24 QLQTQAAEQFKVPPPNTGNVASKPESS--AMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 260
            Q+Q+QAAEQFK P  +  NV SK ESS  A+ QDDEEVDE GVEPKDIELVMTQAGV R  AVKALKAADGDIVSAIMELT
Sbjct:  124 QIQSQAAEQFKAP--DLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPNAVKALKAADGDIVSAIMELT 202          
BLAST of FC923836 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.190e-22
Identity = 60/86 (69.77%), Postives = 66/86 (76.74%), Query Frame = 3
Query:   24 QLQTQAAEQFKVPPPNTGNVASKPESSAMA-------QDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 260
            QLQ+QAAEQFK P  N  NV S+ E+S+ A        DDEEVDE GVEPKDIELVMTQAGV + RAVKALK A+GDIVSAIMELT
Sbjct:  120 QLQSQAAEQFKAP--NLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELT 203          
BLAST of FC923836 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.687e-20
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 3
Query:   24 QLQTQAAEQFKVPPPNTGNVASKPESSA------MAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 260
            QLQTQAA+QF++P    G  + + E+S       + +D+EE+DETGVE +DI+LVMTQAGV RS+AVKALK+ DGDIVSAIMELT
Sbjct:  134 QLQTQAAQQFRMP--EIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELT 216          
BLAST of FC923836 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.254e-18
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 3
Query:   24 QLQTQAAEQFKVPP-----PNTGNVASKPESSAMAQ---DDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 260
            QLQ QAA++FK+P      PNT       E++ +AQ   DDE+VDETGVE KDI+LVMTQAGV R +AVKALK ++GDIVSAIMELT
Sbjct:  129 QLQAQAAQRFKMPDVASMIPNTDG----SEAATVAQEEEDDEDVDETGVEAKDIDLVMTQAGVSRPKAVKALKESNGDIVSAIMELT 211          
BLAST of FC923836 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.140e-18
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 3
Query:   24 QLQTQAAEQFKVPP-----PNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 260
            QLQTQAA++FK+P      PN G+ A+     A  +D+++VD+TGVE +DI+LVMTQAGV +++AV ALKA DGDIVSAIMELT
Sbjct:  126 QLQTQAAQRFKMPDVTSMLPNAGSEATMAPL-AEEEDEDDVDDTGVEARDIDLVMTQAGVSKAKAVSALKANDGDIVSAIMELT 208          
BLAST of FC923836 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.610e-16
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 3
Query:   24 QLQTQAAEQFKVPPPNTGNVASKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 260
            Q Q  AAE+FKVP     NV    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+ALK  + DIV+AIMELT
Sbjct:  134 QAQLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214          
BLAST of FC923836 vs. ExPASy Swiss-Prot
Match: NACA_DANRE (Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 3
Query:   24 QLQTQAAEQFKVPPPNTGNVASKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 260
            Q Q  AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+ALK  + DIV+AIMELT
Sbjct:  134 QAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214          
BLAST of FC923836 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.874e-14
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 3
Query:   24 QLQTQAAEQFKVPPPNTGNVASKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 260
            Q Q  AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+ALK    DIV+AIMELT
Sbjct:  133 QAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 213          
BLAST of FC923836 vs. ExPASy Swiss-Prot
Match: NACA_MOUSE (Nascent polypeptide-associated complex subunit alpha OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.874e-14
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 3
Query:   24 QLQTQAAEQFKVPPPNTGNVASKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 260
            Q Q  AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+ALK    DIV+AIMELT
Sbjct:  134 QAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
The following BLAST results are available for this feature:
BLAST of FC923836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
NACA_PINTA1.384e-2578.75Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH1.998e-2477.78Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH3.190e-2269.77Nascent polypeptide-associated complex subunit alp... [more]
NACA2_ARATH8.687e-2061.18Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH1.254e-1862.07Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH2.140e-1859.52Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI7.610e-1655.56Nascent polypeptide-associated complex subunit alp... [more]
NACA_DANRE1.435e-1453.09Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENTR1.874e-1453.09Nascent polypeptide-associated complex subunit alp... [more]
NACA_MOUSE1.874e-1453.09Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC31709D10EF StrClemenN Citrus clementina cDNA clone C31709D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923836 ID=FC923836; Name=FC923836; organism=Citrus clementina; type=EST; length=402bp
AGCAAGATCGAGGATCTGATTTCCAACTGCAAACTCAGGCTGCAGAGCAG
TTCAAGGTCCCTCCTCCTAACACAGGTAATGTGGCATCAAAGCCTGAGTC
ATCGGCCATGGCTCAAGATGACGAAGAAGTAGATGAGACTGGTGTGGAGC
CAAAGGACATTGAGTTGGTAATGACTCAAGCTGGGGTACCGAGGTCAAGG
GCTGTGAAAGCACTCAAAGCCGCAGATGGTGACATCGTTTCTGCCATTAT
GGAGCTAACAAATTGATGGTCACTTTCTTAATTATGTTGCTCTGCTGAAT
GATCCCATAAGGAAATCTTTTTTTTTTTTTTTTTCTCGCTGTTACCATTT
ACAATTGAAGTTGCAGATTTTTGCAGGCCAAAAAAAAAAAAAAAAAAAAA
AA
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