FC923838

Overview
NameFC923838
Unique NameFC923838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1A_ORYSJ (Flap endonuclease 1a OS=Oryza sativa subsp. japonica GN=FEN-1a PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.221e-99
Identity = 181/234 (77.35%), Postives = 200/234 (85.47%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKQLLTRLRPLDGRTRDT 703
            RTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC +  VYAVASEDMDSLTFGAPRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCILSGCDYCDSI+GIGGQTALKLIRQHGSIE+ILENIN++RYQIPEDWPYQEARRLFKEP V  D  +L  KW+APDEEGL+ FLV ENGFN DRVT            SSQGRLESFFK +++   PL  + +DT
Sbjct:  130 RTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPL--KRKDT 359          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1B_ORYSJ (Flap endonuclease 1b OS=Oryza sativa subsp. japonica GN=FEN-1b PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.267e-78
Identity = 140/194 (72.16%), Postives = 164/194 (84.54%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 583
            RTVKVTK+HN+DCKRLL LMGVPVV+AP EAEAQCAALC++ +V+A+ASEDMDSLTFGA RFLRHL D S ++ PV EFEV+K+LEEL LTMDQFIDLCILSGCDYC++IRGIGGQ ALKLIRQHG IE +++N+++ RY +PEDWPYQE R LFKEP V TD       W+ PDEEGLINFL +EN F+ DRV
Sbjct:  130 RTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTDIP--DFLWTPPDEEGLINFLAAENNFSPDRV 321          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: RAD2_SCHPO (DNA repair protein rad2 OS=Schizosaccharomyces pombe GN=rad2 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.314e-67
Identity = 123/237 (51.90%), Postives = 170/237 (71.73%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKQL-LTRLRPLDGRTRDTPK 709
            RTVKVT+QHND+ KRLL+LMG+P V AP EAEAQCAAL +SG+VYA ASEDMD+L F AP  LRHL     RK P+ E+ + K L  L+++++QF+DLCIL GCDYC+ IRG+G   A++LIRQ+G+++  ++  +R +Y IPEDWPY++ARRLF + EV+  EE +++KW +PD +G+I FLV E GFN DRV               QGRL+SFFK +  +  +P+D +++ + K
Sbjct:  130 RTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEPIRGVGPARAVELIRQYGTLDRFVKEADRSKYPIPEDWPYEDARRLFLDAEVLPGEE-IELKWKSPDADGIIQFLVKEKGFNEDRVKLGINRLEKASKTIPQGRLDSFFKPVPSSPKKPVDTKSKGSAK 365          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1B_XENLA (Flap endonuclease 1-B OS=Xenopus laevis GN=fen1-B PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.105e-65
Identity = 114/218 (52.29%), Postives = 161/218 (73.85%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655
            R VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+EDMD+LTFG P  LRHL    ++K+P+ EF + ++ +++ +  +QF+DLCIL G DYC++IRGIG + A+ LIRQH +IE I++NI+ ++Y IPE+W ++EAR+LF EPEV+ D +  ++KW+ PDEEGL+ F+  E  F+ DR+             S+QGRL+ FFK
Sbjct:  129 RLVKVTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVFQDIGINHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIEEIIDNIDLKKYPIPENWLHKEARQLFLEPEVI-DADITELKWTEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFK 345          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1_MOUSE (Flap endonuclease 1 OS=Mus musculus GN=Fen1 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.041e-64
Identity = 114/218 (52.29%), Postives = 160/218 (73.39%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655
            R VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LTFG+P  +RHL    ++K+P+ EF ++++L+EL L  +QF+DLCIL G DYC+SIRGIG + A+ LI++H SIE I+  ++  +Y +PE+W ++EA++LF EPEVV D E +++KWS P+EE L+ F+  E  F+ +R+             S+QGRL+ FFK
Sbjct:  127 RLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVV-DPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK 343          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1A_XENLA (Flap endonuclease 1-A OS=Xenopus laevis GN=fen1-A PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.776e-64
Identity = 113/218 (51.83%), Postives = 161/218 (73.85%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655
            R VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+EDMD+LTFG P  LRHL    ++K+P+ EF + ++++++ +T +QF+DLCIL G DYC++IRGIG + A+ LIRQH +I+ I++NI+ ++Y +PE+W ++EA+ LF EPEVV D +  ++KW  PDEEGL+ F+  E  F+ DR+             S+QGRL+ FFK
Sbjct:  129 RLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVV-DTDITELKWIEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFK 345          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1_BOVIN (Flap endonuclease 1 OS=Bos taurus GN=FEN1 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.030e-64
Identity = 115/218 (52.75%), Postives = 160/218 (73.39%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655
            R VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LTFG+P  +RHL    ++K+P+ EF +++IL+EL L  +QF+DLCIL G DYC+SIRGIG + A+ LI++H SIE I+  ++  +Y +PE+W ++EA++LF EPEV+ D E +++KWS P+EE LI F+  E  F+ +R+             S+QGRL+ FFK
Sbjct:  129 RLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK 345          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1_HUMAN (Flap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.957e-64
Identity = 115/218 (52.75%), Postives = 159/218 (72.94%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655
            R VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LTFG+P  +RHL    ++K+P+ EF +++IL+EL L  +QF+DLCIL G DYC+SIRGIG + A+ LI++H SIE I+  ++  +Y +PE+W ++EA +LF EPEV+ D E +++KWS P+EE LI F+  E  F+ +R+             S+QGRL+ FFK
Sbjct:  129 RLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-DPESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK 345          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: RAD27_YEAST (Structure-specific endonuclease RAD27 OS=Saccharomyces cerevisiae GN=RAD27 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.244e-58
Identity = 110/223 (49.33%), Postives = 153/223 (68.61%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655
            R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASEDMD+L +  P  LRHL    ++K P+ E +   +L  L+LT++QF+DLCI+ GCDYC+SIRG+G  TALKLI+ HGSIE I+E I     N  +++IPEDWPY++AR LF +PEV+ D  ++ +KWS P E+ LI +L  +  F+ +RV               QGRL+ FF+
Sbjct:  127 RLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPEVI-DGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQ 348          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN_METKA (Flap structure-specific endonuclease OS=Methanopyrus kandleri GN=fen PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.612e-33
Identity = 83/195 (42.56%), Postives = 119/195 (61.03%), Query Frame = 2
Query:   32 DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP----VME-----FEVAKILEELNL-TMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 583
            +D KRLL LMG+P V+APSE EAQCA + + G V+A  S+D DSL FG+PR +R++     RK P    ++E       +  +L++L L + +Q +DL IL G DY  D + GIG + AL+LIR++GS++ + +     + +       ++ RRLF EPEV  D E   + W  PDEEGL+ FLV E  F+ DRV
Sbjct:  130 EDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGSPRLVRNITIVGKRKHPHTGEIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLGTDYNPDGVPGIGPKRALQLIRKYGSLDELKDTDIWPKIERHLPVEPEKLRRLFLEPEVTDDYE---LDWDEPDEEGLVEFLVEERDFSEDRV 321          
The following BLAST results are available for this feature:
BLAST of FC923838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
FEN1A_ORYSJ2.221e-9977.35Flap endonuclease 1a OS=Oryza sativa subsp. japoni... [more]
FEN1B_ORYSJ1.267e-7872.16Flap endonuclease 1b OS=Oryza sativa subsp. japoni... [more]
RAD2_SCHPO1.314e-6751.90DNA repair protein rad2 OS=Schizosaccharomyces pom... [more]
FEN1B_XENLA6.105e-6552.29Flap endonuclease 1-B OS=Xenopus laevis GN=fen1-B ... [more]
FEN1_MOUSE1.041e-6452.29Flap endonuclease 1 OS=Mus musculus GN=Fen1 PE=1 S... [more]
FEN1A_XENLA1.776e-6451.83Flap endonuclease 1-A OS=Xenopus laevis GN=fen1-A ... [more]
FEN1_BOVIN3.030e-6452.75Flap endonuclease 1 OS=Bos taurus GN=FEN1 PE=2 SV=... [more]
FEN1_HUMAN3.957e-6452.75Flap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 S... [more]
RAD27_YEAST3.244e-5849.33Structure-specific endonuclease RAD27 OS=Saccharom... [more]
FEN_METKA3.612e-3342.56Flap structure-specific endonuclease OS=Methanopyr... [more]

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Properties
Property NameValue
Genbank descriptionC31709D12EF StrClemenN Citrus clementina cDNA clone C31709D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923838 ID=FC923838; Name=FC923838; organism=Citrus clementina; type=EST; length=711bp
GCGAACTGTAAAGGTGACAAAGCAGCACAATGATGACTGCAAAAGACTTC
TAAAACTCATGGGAGTGCCTGTAGTTGAGGCTCCTTCTGAAGCAGAAGCC
CAGTGTGCTGCTCTTTGCAAATCAGGACAGGTTTATGCTGTGGCTTCTGA
AGACATGGATTCCCTAACTTTTGGTGCTCCTAGATTTCTTCGCCATTTGA
TGGATCCTAGCTCAAGAAAAATACCAGTCATGGAGTTTGAAGTTGCAAAG
ATTTTGGAGGAATTGAATCTTACCATGGATCAATTCATAGACTTGTGCAT
TCTCTCTGGATGTGATTACTGTGATAGTATTCGAGGAATTGGTGGACAAA
CTGCTTTGAAGCTCATTCGTCAACATGGCTCTATAGAGACTATACTAGAG
AACATAAACAGAGAAAGGTACCAAATTCCAGAGGATTGGCCTTATCAAGA
GGCACGACGGCTGTTTAAAGAACCTGAAGTTGTCACTGATGAAGAGCAAC
TTCAAATTAAATGGAGTGCTCCAGATGAAGAGGGGTTGATTAACTTTCTG
GTGAGTGAAAATGGGTTCAACAGTGACAGAGTAACAAAGGCAATAGAAAA
AATTAAAGCGGCTAAGAACAAGTCATCACAGGGACGACTTGAATCATTTT
TTAAACAGTTGCTAACACGTCTGCGCCCATTAGACGGAAGGACCAGAGAC
ACTCCTAAAGC
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