FC923838
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1A_ORYSJ (Flap endonuclease 1a OS=Oryza sativa subsp. japonica GN=FEN-1a PE=2 SV=1) HSP 1 Score: 361.688 bits (927), Expect = 2.221e-99 Identity = 181/234 (77.35%), Postives = 200/234 (85.47%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKQLLTRLRPLDGRTRDT 703 RTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC + VYAVASEDMDSLTFGAPRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCILSGCDYCDSI+GIGGQTALKLIRQHGSIE+ILENIN++RYQIPEDWPYQEARRLFKEP V D +L KW+APDEEGL+ FLV ENGFN DRVT SSQGRLESFFK +++ PL + +DT Sbjct: 130 RTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPL--KRKDT 359
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1B_ORYSJ (Flap endonuclease 1b OS=Oryza sativa subsp. japonica GN=FEN-1b PE=2 SV=1) HSP 1 Score: 292.738 bits (748), Expect = 1.267e-78 Identity = 140/194 (72.16%), Postives = 164/194 (84.54%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 583 RTVKVTK+HN+DCKRLL LMGVPVV+AP EAEAQCAALC++ +V+A+ASEDMDSLTFGA RFLRHL D S ++ PV EFEV+K+LEEL LTMDQFIDLCILSGCDYC++IRGIGGQ ALKLIRQHG IE +++N+++ RY +PEDWPYQE R LFKEP V TD W+ PDEEGLINFL +EN F+ DRV Sbjct: 130 RTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTDIP--DFLWTPPDEEGLINFLAAENNFSPDRV 321
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: RAD2_SCHPO (DNA repair protein rad2 OS=Schizosaccharomyces pombe GN=rad2 PE=1 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 1.314e-67 Identity = 123/237 (51.90%), Postives = 170/237 (71.73%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKQL-LTRLRPLDGRTRDTPK 709 RTVKVT+QHND+ KRLL+LMG+P V AP EAEAQCAAL +SG+VYA ASEDMD+L F AP LRHL RK P+ E+ + K L L+++++QF+DLCIL GCDYC+ IRG+G A++LIRQ+G+++ ++ +R +Y IPEDWPY++ARRLF + EV+ EE +++KW +PD +G+I FLV E GFN DRV QGRL+SFFK + + +P+D +++ + K Sbjct: 130 RTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEPIRGVGPARAVELIRQYGTLDRFVKEADRSKYPIPEDWPYEDARRLFLDAEVLPGEE-IELKWKSPDADGIIQFLVKEKGFNEDRVKLGINRLEKASKTIPQGRLDSFFKPVPSSPKKPVDTKSKGSAK 365
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1B_XENLA (Flap endonuclease 1-B OS=Xenopus laevis GN=fen1-B PE=1 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 6.105e-65 Identity = 114/218 (52.29%), Postives = 161/218 (73.85%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655 R VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+EDMD+LTFG P LRHL ++K+P+ EF + ++ +++ + +QF+DLCIL G DYC++IRGIG + A+ LIRQH +IE I++NI+ ++Y IPE+W ++EAR+LF EPEV+ D + ++KW+ PDEEGL+ F+ E F+ DR+ S+QGRL+ FFK Sbjct: 129 RLVKVTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVFQDIGINHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIEEIIDNIDLKKYPIPENWLHKEARQLFLEPEVI-DADITELKWTEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFK 345
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1_MOUSE (Flap endonuclease 1 OS=Mus musculus GN=Fen1 PE=1 SV=1) HSP 1 Score: 246.514 bits (628), Expect = 1.041e-64 Identity = 114/218 (52.29%), Postives = 160/218 (73.39%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655 R VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEVV D E +++KWS P+EE L+ F+ E F+ +R+ S+QGRL+ FFK Sbjct: 127 RLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVV-DPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK 343
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1A_XENLA (Flap endonuclease 1-A OS=Xenopus laevis GN=fen1-A PE=1 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 1.776e-64 Identity = 113/218 (51.83%), Postives = 161/218 (73.85%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655 R VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+EDMD+LTFG P LRHL ++K+P+ EF + ++++++ +T +QF+DLCIL G DYC++IRGIG + A+ LIRQH +I+ I++NI+ ++Y +PE+W ++EA+ LF EPEVV D + ++KW PDEEGL+ F+ E F+ DR+ S+QGRL+ FFK Sbjct: 129 RLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVV-DTDITELKWIEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFK 345
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1_BOVIN (Flap endonuclease 1 OS=Bos taurus GN=FEN1 PE=2 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 3.030e-64 Identity = 115/218 (52.75%), Postives = 160/218 (73.39%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655 R VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KWS P+EE LI F+ E F+ +R+ S+QGRL+ FFK Sbjct: 129 RLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK 345
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN1_HUMAN (Flap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 3.957e-64 Identity = 115/218 (52.75%), Postives = 159/218 (72.94%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655 R VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D E +++KWS P+EE LI F+ E F+ +R+ S+QGRL+ FFK Sbjct: 129 RLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-DPESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK 345
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: RAD27_YEAST (Structure-specific endonuclease RAD27 OS=Saccharomyces cerevisiae GN=RAD27 PE=1 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 3.244e-58 Identity = 110/223 (49.33%), Postives = 153/223 (68.61%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 655 R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASEDMD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GCDYC+SIRG+G TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +PEV+ D ++ +KWS P E+ LI +L + F+ +RV QGRL+ FF+ Sbjct: 127 RLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPEVI-DGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQ 348
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN_METKA (Flap structure-specific endonuclease OS=Methanopyrus kandleri GN=fen PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 3.612e-33 Identity = 83/195 (42.56%), Postives = 119/195 (61.03%), Query Frame = 2 Query: 32 DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP----VME-----FEVAKILEELNL-TMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 583 +D KRLL LMG+P V+APSE EAQCA + + G V+A S+D DSL FG+PR +R++ RK P ++E + +L++L L + +Q +DL IL G DY D + GIG + AL+LIR++GS++ + + + + ++ RRLF EPEV D E + W PDEEGL+ FLV E F+ DRV Sbjct: 130 EDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGSPRLVRNITIVGKRKHPHTGEIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLGTDYNPDGVPGIGPKRALQLIRKYGSLDELKDTDIWPKIERHLPVEPEKLRRLFLEPEVTDDYE---LDWDEPDEEGLVEFLVEERDFSEDRV 321 The following BLAST results are available for this feature:
BLAST of FC923838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923838 ID=FC923838; Name=FC923838; organism=Citrus clementina; type=EST; length=711bpback to top |