FC923842

Overview
NameFC923842
Unique NameFC923842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923842 vs. ExPASy Swiss-Prot
Match: PA2G4_MOUSE (Proliferation-associated protein 2G4 OS=Mus musculus GN=Pa2g4 PE=1 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.594e-39
Identity = 75/161 (46.58%), Postives = 106/161 (65.84%), Query Frame = 2
Query:  170 EREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDET-VLQEGDMIKIDLGCHIDGFIAVVAHTHVL---QDEPVTGRXXXXXXXXXXXXXXXLRLGRPGKKN 640
            E E++E  +    VVTKYK   +IAN+ L+ +V     GV ++ LCEKGD+ I E+TG ++K  +K++++G+AFP+ +SVNN +CHFSPL SD+  +L+EGD++KIDLG H+DGFIA VAHT V+   Q   VTGR               LRL +PG +N
Sbjct:    4 EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKK-EKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQN 163          

HSP 2 Score: 38.1206 bits (87), Expect = 2.594e-39
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1
Query:  634 EEQDVTEAIQKVAAAYDCKIVEXVLSHQLKQFVI 735
            +   VTEA  KVA +++C  +E +LSHQLKQ VI
Sbjct:  162 QNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVI 195          
BLAST of FC923842 vs. ExPASy Swiss-Prot
Match: PA2G4_HUMAN (Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.379e-39
Identity = 75/161 (46.58%), Postives = 106/161 (65.84%), Query Frame = 2
Query:  170 EREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDET-VLQEGDMIKIDLGCHIDGFIAVVAHTHVL---QDEPVTGRXXXXXXXXXXXXXXXLRLGRPGKKN 640
            E E++E  +    VVTKYK   +IAN+ L+ +V     GV ++ LCEKGD+ I E+TG ++K  +K++++G+AFP+ +SVNN +CHFSPL SD+  +L+EGD++KIDLG H+DGFIA VAHT V+   Q   VTGR               LRL +PG +N
Sbjct:    4 EDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKK-EKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQN 163          

HSP 2 Score: 38.1206 bits (87), Expect = 3.379e-39
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1
Query:  634 EEQDVTEAIQKVAAAYDCKIVEXVLSHQLKQFVI 735
            +   VTEA  KVA +++C  +E +LSHQLKQ VI
Sbjct:  162 QNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVI 195          
BLAST of FC923842 vs. ExPASy Swiss-Prot
Match: PRLA_DICDI (Proliferation-associated protein A OS=Dictyostelium discoideum GN=prlA PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.600e-35
Identity = 72/168 (42.86%), Postives = 105/168 (62.50%), Query Frame = 2
Query:  158 MSDDEREEKEL------DLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQD---EPVTGRXXXXXXXXXXXXXXXLRLGRPGK 634
            MS+ ++E KE       DL++P VV  Y +A  IAN A++ V+S+C  G  +VD+C+ GD FI  +    +   +K +E+G+AFP+CVSVNN + HFSPL  +   L++GD++KIDLGCHIDG+IAV AHT ++ +   E +TG+               LR+ RPGK
Sbjct:    1 MSNKDQEIKEEAPVAIEDLSNPVVVDSYNAAGIIANNAIKHVISKCVVGALVVDICQYGDDFIEAEAAKTFTK-RKNLEKGIAFPTCVSVNNCVGHFSPLKGNTRTLKQGDVVKIDLGCHIDGYIAVGAHTIIIGNTSAESMTGKVADAICAAHYALEAALRMIRPGK 167          

HSP 2 Score: 34.6538 bits (78), Expect = 1.600e-35
Identity = 14/35 (40.00%), Postives = 23/35 (65.71%), Query Frame = 1
Query:  631 KEEQDVTEAIQKVAAAYDCKIVEXVLSHQLKQFVI 735
            K   +VT+ I+K++  Y    V  +LSH+LK+F+I
Sbjct:  167 KTSNEVTQVIEKISDMYGVTSVSGILSHELKRFII 201          
BLAST of FC923842 vs. ExPASy Swiss-Prot
Match: CDB4_SCHPO (Curved DNA-binding protein OS=Schizosaccharomyces pombe GN=cdb4 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.067e-28
Identity = 61/155 (39.35%), Postives = 86/155 (55.48%), Query Frame = 2
Query:  185 ELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASD---ETVLQEGDMIKIDLGCHIDGFIAVVAHTHVLQDEPVTGRXXXXXXXXXXXXXXXLRLGRPGKKN 640
            +  L++PE V KYK A E++   ++ VV  C+PG KI D+C +GD  + E    +Y+   K   +G+AFP+ VS N+   H SPL SD      L+ GD++KI LG HIDGF ++VA T V+ +EPVTG                 R  +PG  N
Sbjct:   13 DYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKKVYRT--KDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEPVTGPAADVIAAASAALKAAQRTIKPGNTN 165          

HSP 2 Score: 32.3426 bits (72), Expect = 2.067e-28
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  646 VTEAIQKVAAAYDCKIVEXVLSHQLKQFVI 735
            VT+ + K+A +Y CK V  +LSHQ ++ VI
Sbjct:  168 VTDIVDKIATSYGCKPVAGMLSHQQEREVI 197          
BLAST of FC923842 vs. ExPASy Swiss-Prot
Match: AMPM2_BOVIN (Methionine aminopeptidase 2 OS=Bos taurus GN=METAP2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  176 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 532
            E+K LD  S E+   ++ AAE   +  + V+S  KPG+ ++++CEK +   R       K +K+  +  G+AFP+  S+NN   H++P A D TVLQ  D+ KID G HI G I   A T
Sbjct:  153 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKMEDCSR-------KLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFT 265          
BLAST of FC923842 vs. ExPASy Swiss-Prot
Match: AMPM2_RAT (Methionine aminopeptidase 2 OS=Rattus norvegicus GN=Metap2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  176 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 532
            E+K LD  S E+   ++ AAE   +  + V+S  KPG+ ++++CEK +   R       K +K+  +  G+AFP+  S+NN   H++P A D TVLQ  D+ KID G HI G I   A T
Sbjct:  154 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR-------KLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFT 266          
BLAST of FC923842 vs. ExPASy Swiss-Prot
Match: AMPM2_MOUSE (Methionine aminopeptidase 2 OS=Mus musculus GN=Metap2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  176 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 532
            E+K LD  S E+   ++ AAE   +  + V+S  KPG+ ++++CEK +   R       K +K+  +  G+AFP+  S+NN   H++P A D TVLQ  D+ KID G HI G I   A T
Sbjct:  154 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR-------KLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFT 266          
BLAST of FC923842 vs. ExPASy Swiss-Prot
Match: AMPM2_HUMAN (Methionine aminopeptidase 2 OS=Homo sapiens GN=METAP2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  176 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKK-IERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 532
            E+K LD  S E+   ++ AAE   +  + V+S  KPG+ ++++CEK +   R       K +K+  +  G+AFP+  S+NN   H++P A D TVLQ  D+ KID G HI G I   A T
Sbjct:  154 EKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR-------KLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFT 266          
BLAST of FC923842 vs. ExPASy Swiss-Prot
Match: ARX1_SCHPO (Probable metalloprotease arx1 OS=Schizosaccharomyces pombe GN=arx1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 40/123 (32.52%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  215 TKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSP-----LASDETV--LQEGDMIKIDLGCHIDGFIAVVAHTHVLQDEPVTG 562
            +KY+ A  + +KA   V S C PG    ++   GD+ + E   ++YK+  ++ E+G+A P+ + VNN   +++P     +A ++    LQ GD+ KI +G H DG+ A+++HT V+   P  G
Sbjct:   19 SKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSIYKS--QRFEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALISHTIVVTPPPQPG 139          
BLAST of FC923842 vs. ExPASy Swiss-Prot
Match: AMP2A_ARATH (Methionine aminopeptidase 2A OS=Arabidopsis thaliana GN=MAP2A PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 39/119 (32.77%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  176 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAHT 532
            E++E++     +    + AAE+  +  + + S  KPG+ ++DLCE  ++ +R+         +  ++ G+AFP+  S+NN   H++P + D+TVLQ  D++K+D G HIDG I   A T
Sbjct:  117 EKREMERLQKPIYNSLRQAAEVHRQVRKYMRSILKPGMLMIDLCETLENTVRKLIS------ENGLQAGIAFPTGCSLNNVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGHIVDSAFT 229          
The following BLAST results are available for this feature:
BLAST of FC923842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PA2G4_MOUSE2.594e-3946.58Proliferation-associated protein 2G4 OS=Mus muscul... [more]
PA2G4_HUMAN3.379e-3946.58Proliferation-associated protein 2G4 OS=Homo sapie... [more]
PRLA_DICDI1.600e-3542.86Proliferation-associated protein A OS=Dictyosteliu... [more]
CDB4_SCHPO2.067e-2839.35Curved DNA-binding protein OS=Schizosaccharomyces ... [more]
AMPM2_BOVIN1.774e-1438.33Methionine aminopeptidase 2 OS=Bos taurus GN=METAP... [more]
AMPM2_RAT2.317e-1438.33Methionine aminopeptidase 2 OS=Rattus norvegicus G... [more]
AMPM2_MOUSE2.317e-1438.33Methionine aminopeptidase 2 OS=Mus musculus GN=Met... [more]
AMPM2_HUMAN2.317e-1438.33Methionine aminopeptidase 2 OS=Homo sapiens GN=MET... [more]
ARX1_SCHPO3.952e-1432.52Probable metalloprotease arx1 OS=Schizosaccharomyc... [more]
AMP2A_ARATH6.742e-1432.77Methionine aminopeptidase 2A OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC31709E04EF StrClemenN Citrus clementina cDNA clone C31709E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923842 ID=FC923842; Name=FC923842; organism=Citrus clementina; type=EST; length=735bp
GCTAGCTGTGTCCCTATCGAGCCACCTCTTCAGTCTTCACCCTCTTTCTC
TCTATCTCGTATTCTATTTTTTTATCTTTGCAGTACCCTAGCTTCACCGC
CGTCACCGTCAGTTTATCACAATTGTTTGGTAGATTTTTTCTACAAAAAT
CAAAACGATGTCGGACGATGAAAGGGAGGAGAAGGAGTTGGATCTCACTT
CTCCTGAAGTTGTCACCAAATACAAAAGCGCTGCTGAGATCGCCAATAAG
GCGTTGCAGTTGGTAGTATCAGAATGCAAACCCGGTGTTAAGATTGTTGA
CCTTTGTGAGAAGGGAGATTCATTTATTAGAGAACAAACCGGCAACATGT
ACAAGAATGTAAAGAAGAAGATCGAGAGGGGCGTTGCATTCCCAAGTTGT
GTTTCTGTTAACAACACACTCTGTCATTTTTCACCACTTGCAAGTGATGA
GACAGTCTTGCAAGAAGGAGACATGATCAAGATTGATTTGGGATGTCACA
TAGATGGGTTTATTGCTGTAGTTGCACACACTCATGTCCTCCAGGATGAG
CCTGTAACAGGCAGGGCAGCTGATGTTATTGCTGCAGCAAATACTGCTGC
TGAGGTTGCCTTGAGGCTTGGTAGGCCAGGAAAGAAGAACAAGATGTAAC
AGAAGCCATTCAGAAGGTAGCTGCTGCATATGATTGCAAGATTGTTGAAN
GTGTTCTCAGCCACCAGCTGAAGCAGTTTGTGATT
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