FC923849

Overview
NameFC923849
Unique NameFC923849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923849 vs. ExPASy Swiss-Prot
Match: RISB_ARATH (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g44050 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.457e-77
Identity = 144/193 (74.61%), Postives = 170/193 (88.08%), Query Frame = 2
Query:   65 SSSRQFINGFSPKPTSMSFSHSSSLKGFGTQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIE 643
            SSS  +I+G S    S + S SSS  GF + +A+E++ R SFVQT AVRH+TG L + EGLRFA+VVARFNE+VTKLLLEGA+ETFKKYSV+EE+I+V+WVPGSFEIGVVAQ LGKSGK++AVLCIGAV+RGDTTHYDAVANSAASGVLSA +NSGVPCIFGVLTC++MDQALNR+GGK+GNKGAE ALTA+E
Sbjct:   25 SSSACYIHGGSSVNKSNNLSFSSSTSGFASPLAVEKELRSSFVQTAAVRHVTGSLIRGEGLRFAIVVARFNEVVTKLLLEGAIETFKKYSVREEDIEVIWVPGSFEIGVVAQNLGKSGKFHAVLCIGAVIRGDTTHYDAVANSAASGVLSASINSGVPCIFGVLTCEDMDQALNRSGGKAGNKGAETALTALE 217          
BLAST of FC923849 vs. ExPASy Swiss-Prot
Match: RISB_SPIOL (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.351e-67
Identity = 127/181 (70.17%), Postives = 152/181 (83.98%), Query Frame = 2
Query:  104 PTSMSFSHSSSLKGFG-TQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIE 643
            P S   S SSS  G G   +A  +K R SFV T AVR L G++TK +  RFA+VVARFNE VT+ L+EGAL+TFKKYSV E+ IDVVWVPG++E+GV AQ LGKSGKY+A++C+GAVV+GDT+HYDAV NSA+SGVLSAG+NSGVPC+FGVLTCDNMDQA+NRAGGK+GNKGAE+ALTAIE
Sbjct:   32 PFSAPLSSSSSFPGCGLVHVASNKKNRASFVVTNAVRELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNED-IDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAGNKGAESALTAIE 211          
BLAST of FC923849 vs. ExPASy Swiss-Prot
Match: RISB_EXIS2 (6,7-dimethyl-8-ribityllumazine synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ribH PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.192e-39
Identity = 82/148 (55.41%), Postives = 108/148 (72.97%), Query Frame = 2
Query:  221 GFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEWHLYLST 664
            GFLT  EGLR A+V ARFNEL+T  L+ GA + F+++ V  + +D  WVPG+FEI +VA++L KSG Y+AV+ +GAV+RG T+HYD V N  A GV  A   +GVP IFGVLT D+++QA+ RAG K+GNKG EAA++AIE    L T
Sbjct:    5 GFLT-GEGLRVAIVAARFNELITSKLVGGANDAFRRHGVAADAVDTAWVPGAFEIPLVAEKLAKSGNYDAVITLGAVIRGATSHYDYVCNEVAKGVAGASRETGVPIIFGVLTTDSIEQAVERAGTKAGNKGYEAAVSAIEMANLLRT 151          
BLAST of FC923849 vs. ExPASy Swiss-Prot
Match: RISB_ACTPJ (6,7-dimethyl-8-ribityllumazine synthase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=ribH PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.468e-39
Identity = 76/143 (53.15%), Postives = 104/143 (72.73%), Query Frame = 2
Query:  215 LTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIE 643
            +TG L    GL+F +V ARFN+ +   LL GA++T  ++   E NID  WVPG+FEI +VA+++  SGKY+AV+C+G V+RG TTHYD V N AA G+ +  + +GVP IFGVLT +N++QA+ RAG K+GNKG+E AL AIE
Sbjct:    4 ITGNLVAT-GLKFGIVTARFNDFINDKLLSGAIDTLVRHGADENNIDTAWVPGAFEIPLVAKKMATSGKYDAVICLGTVIRGSTTHYDYVCNEAAKGIGAVALETGVPVIFGVLTTENIEQAIERAGTKAGNKGSECALGAIE 145          
BLAST of FC923849 vs. ExPASy Swiss-Prot
Match: RISB_ACTP7 (6,7-dimethyl-8-ribityllumazine synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=ribH PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.468e-39
Identity = 76/143 (53.15%), Postives = 104/143 (72.73%), Query Frame = 2
Query:  215 LTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIE 643
            +TG L    GL+F +V ARFN+ +   LL GA++T  ++   E NID  WVPG+FEI +VA+++  SGKY+AV+C+G V+RG TTHYD V N AA G+ +  + +GVP IFGVLT +N++QA+ RAG K+GNKG+E AL AIE
Sbjct:    4 ITGNLVAT-GLKFGIVTARFNDFINDKLLSGAIDTLVRHGADENNIDTAWVPGAFEIPLVAKKMATSGKYDAVICLGTVIRGSTTHYDYVCNEAAKGIGAVALETGVPVIFGVLTTENIEQAIERAGTKAGNKGSECALGAIE 145          
BLAST of FC923849 vs. ExPASy Swiss-Prot
Match: RISB_ANOFW (6,7-dimethyl-8-ribityllumazine synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=ribH PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.530e-39
Identity = 77/134 (57.46%), Postives = 104/134 (77.61%), Query Frame = 2
Query:  242 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIE 643
            GL+  +VVARFNE +T  LL GAL+  K++ V+E++IDV WVPG+FEI +VA+++ +S KY+AV+ +GAV+RG T+HYD V N  A G   A ++SGVP IFGVLT D ++QA+ RAG K+GNKG EAAL+AIE
Sbjct:   12 GLKIGIVVARFNEFITSKLLSGALDGLKRHGVEEQHIDVAWVPGAFEIPLVAKKMAESKKYDAVITLGAVIRGATSHYDYVCNEVAKGTSHAALSSGVPVIFGVLTTDTIEQAIERAGTKAGNKGWEAALSAIE 145          
BLAST of FC923849 vs. ExPASy Swiss-Prot
Match: RISB_CLOB8 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=ribH PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.916e-39
Identity = 73/143 (51.05%), Postives = 108/143 (75.52%), Query Frame = 2
Query:  236 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEWHLYLST 664
            +EGL+F +VV RFNE +   LLEGA++  K++ VKEE+ID+ WVPG+FEI ++A+++ KS KY+ V+C+GAV++G T+HYD V +  + G+ S  + SG P IFGVLT + ++QA+ RAG K+GNKG E+A++AIE    L+T
Sbjct:   10 SEGLKFGIVVGRFNEFIGGKLLEGAIDGLKRHGVKEEDIDIAWVPGAFEIPLIAKKMAKSPKYDGVICLGAVIKGSTSHYDYVCSEVSKGIASVSLESGKPVIFGVLTTNTIEQAIERAGTKAGNKGYESAVSAIEMANLLNT 152          
BLAST of FC923849 vs. ExPASy Swiss-Prot
Match: RISB_PELTS (6,7-dimethyl-8-ribityllumazine synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ribH PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.009e-38
Identity = 75/144 (52.08%), Postives = 106/144 (73.61%), Query Frame = 2
Query:  212 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIE 643
            HL G     +GLRF +V+ RFNE +T  LL GAL+   ++ V +++I+V WVPG+FEI +VA+++  + KY+AV+C+GAV+RG T H+D VA   A GV   G+ SGVP IFGV+T D+++QA+ RAG K+GNKG +AA+TAIE
Sbjct:    8 HLIG-----QGLRFGIVIGRFNEFITNKLLSGALDALNRHGVADQDIEVAWVPGAFEIPMVARKMASAMKYDAVICLGAVIRGATPHFDYVAGEVAKGVARIGLESGVPTIFGVITADSIEQAIERAGAKAGNKGWDAAVTAIE 146          
BLAST of FC923849 vs. ExPASy Swiss-Prot
Match: RISB_HAEPS (6,7-dimethyl-8-ribityllumazine synthase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=ribH PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.009e-38
Identity = 75/143 (52.45%), Postives = 105/143 (73.43%), Query Frame = 2
Query:  215 LTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIE 643
            +TG L   E L+F +V ARFN+ +   LL GA++T  ++   E +ID  WVPG+FEI +VA+++ +SGKY+AV+C+G V+RG TTHYD V N AA G+ +  + +GVP IFGVLT +N++QA+ RAG K+GNKG+E AL AIE
Sbjct:    4 ITGNLVATE-LKFGIVCARFNDFINDKLLSGAIDTLVRHGASESDIDTAWVPGAFEIPLVAKKMAESGKYDAVICLGTVIRGSTTHYDYVCNEAAKGIGAVSLQTGVPVIFGVLTTENIEQAIERAGTKAGNKGSECALGAIE 145          
BLAST of FC923849 vs. ExPASy Swiss-Prot
Match: RISB_ACTPL (6,7-dimethyl-8-ribityllumazine synthase OS=Actinobacillus pleuropneumoniae GN=ribH PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.318e-38
Identity = 75/143 (52.45%), Postives = 104/143 (72.73%), Query Frame = 2
Query:  215 LTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIE 643
            +TG L    GL+F +V ARFN+ +   LL GA++T  ++   E +ID  WVPG+FEI +VA+++  SGKY+AV+C+G V+RG TTHYD V N AA G+ +  + +GVP IFGVLT +N++QA+ RAG K+GNKG+E AL AIE
Sbjct:    4 ITGNLVAT-GLKFGIVTARFNDFINDKLLSGAIDTLVRHGAYENDIDTAWVPGAFEIPLVAKKMANSGKYDAVICLGTVIRGSTTHYDYVCNEAAKGIGAVALETGVPVIFGVLTTENIEQAIERAGTKAGNKGSECALGAIE 145          
The following BLAST results are available for this feature:
BLAST of FC923849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_ARATH2.457e-7774.616,7-dimethyl-8-ribityllumazine synthase, chloropla... [more]
RISB_SPIOL1.351e-6770.176,7-dimethyl-8-ribityllumazine synthase, chloropla... [more]
RISB_EXIS21.192e-3955.416,7-dimethyl-8-ribityllumazine synthase OS=Exiguob... [more]
RISB_ACTPJ3.468e-3953.156,7-dimethyl-8-ribityllumazine synthase OS=Actinob... [more]
RISB_ACTP73.468e-3953.156,7-dimethyl-8-ribityllumazine synthase OS=Actinob... [more]
RISB_ANOFW4.530e-3957.466,7-dimethyl-8-ribityllumazine synthase OS=Anoxyba... [more]
RISB_CLOB85.916e-3951.056,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_PELTS1.009e-3852.086,7-dimethyl-8-ribityllumazine synthase OS=Pelotom... [more]
RISB_HAEPS1.009e-3852.456,7-dimethyl-8-ribityllumazine synthase OS=Haemoph... [more]
RISB_ACTPL1.318e-3852.456,7-dimethyl-8-ribityllumazine synthase OS=Actinob... [more]

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Properties
Property NameValue
Genbank descriptionC31709E11EF StrClemenN Citrus clementina cDNA clone C31709E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923849 ID=FC923849; Name=FC923849; organism=Citrus clementina; type=EST; length=725bp
GGAGCTGTTATCAGAACAATCTGGCTTTAAACCTCAAACAACAATTCATC
ACTCTCCTCTCGCATCATCATCTCGTCAATTCATTAATGGGTTTTCTCCA
AAACCAACTTCTATGTCCTTTTCACATTCTTCTTCACTCAAAGGATTTGG
AACCCAGATTGCGATTGAGAGGAAGGAACGTTTATCGTTTGTACAAACGG
AAGCTGTGAGGCATTTGACTGGATTCCTTACAAAAAATGAGGGGCTCCGT
TTTGCTTTGGTTGTTGCACGGTTTAATGAGCTTGTGACAAAACTACTGTT
AGAGGGAGCTTTGGAGACCTTCAAGAAGTATTCAGTTAAAGAAGAAAACA
TTGATGTTGTGTGGGTTCCTGGTAGTTTTGAAATTGGTGTTGTTGCACAA
CAGCTAGGGAAGTCTGGGAAGTATAATGCAGTTTTGTGTATTGGTGCCGT
GGTTAGAGGTGATACTACTCACTATGATGCTGTAGCTAATTCTGCTGCAT
CCGGAGTTCTTTCAGCTGGCATGAATTCAGGTGTTCCATGCATATTTGGC
GTCCTGACTTGCGATAACATGGACCAGGCTTTGAATCGAGCTGGTGGTAA
ATCTGGGAATAAGGGTGCTGAGGCAGCTTTGACTGCTATTGAATGGCATC
TTTATTTGAGCACACCTGAAGTAGTGGTTTCACCAGAAGAGTGGACAGAG
TCCTTTTTCGCTCATATTTCTTTTT
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