FC923850

Overview
NameFC923850
Unique NameFC923850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923850 vs. ExPASy Swiss-Prot
Match: ATB15_ARATH (Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 4.879e-119
Identity = 213/253 (84.19%), Postives = 233/253 (92.09%), Query Frame = 3
Query:    3 SPEDALMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLLSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRATNNYSTNSTCMRSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALSPSNISSQAGLRTPLGTPEALTLARWICHSYRCYLGVDLLKSSSEGSESILKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPRYAQ 761
            SPEDA++PRD+FLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLL SGFRIIPLDS KE SSPNRTLDLASALEIG AG +A+ + S NSTC RSVMTIAFEF  ESHMQEHVA+MARQYVR IISSVQRVALALSPS+ISSQ GLRTPLGTPEA TLARWIC SYR Y+GV+LLKS+S+G+ESILKNLWHHTDA++CCS+KALPVFTFANQAGLDMLETTLVALQDI+LEKIFDD+GRK L +EFP+  Q
Sbjct:  535 SPEDAIVPRDIFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSAKEVSSPNRTLDLASALEIGSAGTKASTDQSGNSTCARSVMTIAFEFGIESHMQEHVASMARQYVRGIISSVQRVALALSPSHISSQVGLRTPLGTPEAQTLARWICQSYRGYMGVELLKSNSDGNESILKNLWHHTDAIICCSMKALPVFTFANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQ 787          
BLAST of FC923850 vs. ExPASy Swiss-Prot
Match: ATHB8_ARATH (Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.808e-89
Identity = 176/253 (69.57%), Postives = 206/253 (81.42%), Query Frame = 3
Query:    9 EDALMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLLSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRATNNYSTNSTCMRSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALSPSNISSQAGLRTPLGTPEALTLARWICHSYRCYLGVDLLKSSSEGSESILKNLWHHTDAVMCCSLKAL-PVFTFANQAGLDMLETTLVALQDITLEKIFD-DHGRKALFAEFPRYAQ 761
            ED +MP D+FLLQ+CSG+DENAV +CAELIFAPIDASF+DDAP++ SGFRIIPLDS  E  SPNRTLDLASAL++   G+R   +   +    +SVMTIAF+ AFE HMQE+VA+MARQYVRS+I+SVQRVALALSPS+    +GLR P  +PEA TLARWI HSYRCYLGVDLLK        +LK+LWHH DAVMCCSLKAL PVFTFANQAGLDMLETTLVALQDITL+KIFD ++G+K L +EFP+  Q
Sbjct:  539 EDMMMPADIFLLQMCSGVDENAVESCAELIFAPIDASFSDDAPIIPSGFRIIPLDSKSEGLSPNRTLDLASALDV---GSRTAGDSCGSRGNSKSVMTIAFQLAFEMHMQENVASMARQYVRSVIASVQRVALALSPSS-HQLSGLRPPPASPEAHTLARWISHSYRCYLGVDLLKPH---GTDLLKSLWHHPDAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGKKTLSSEFPQIMQ 784          
BLAST of FC923850 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSJ (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. japonica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.924e-87
Identity = 156/252 (61.90%), Postives = 200/252 (79.37%), Query Frame = 3
Query:    9 EDALMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLLSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRATNNYSTNSTC-MRSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALSPSNISSQAGLRTPLGTPEALTLARWICHSYRCYLGVDLLKSSSEGSESILKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPRYAQ 761
            ++ ++ RDM+LLQLCSG+DENA G CA+L+FAPID SFADDAPLL SGFR+IPLD   +  S  RTLDLAS LE+G  G    ++  T+STC  RSV+TIAF+F++E+H++E VA MARQYVR++++SVQRVA+A++PS +  Q   + P G+PEA TLARWI  SYR + G DLL++ S+ ++S LK +W H+D++MCCSLKA PVFTFANQAGLDMLETTL+ALQDI+LEKI DD GRKAL  EFP+  Q
Sbjct:  560 DEVVLSRDMYLLQLCSGVDENAAGACAQLVFAPIDESFADDAPLLPSGFRVIPLDGKTDAPSATRTLDLASTLEVGSGGTTRASS-DTSSTCNTRSVLTIAFQFSYENHLRESVAAMARQYVRTVVASVQRVAMAIAPSRLGGQIETKNPPGSPEAHTLARWIGRSYRFHTGADLLRTDSQSTDSSLKAMWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEFPKIMQ 810          
BLAST of FC923850 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSI (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 8.399e-87
Identity = 156/252 (61.90%), Postives = 199/252 (78.97%), Query Frame = 3
Query:    9 EDALMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLLSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRATNNYSTNSTC-MRSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALSPSNISSQAGLRTPLGTPEALTLARWICHSYRCYLGVDLLKSSSEGSESILKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPRYAQ 761
            ++ ++ RDM+LLQLCSG+DENA G CA+L+FAPID SFADDAPLL SGFR+IPLD   +  S  RTLDLAS LE+G  G    ++  T+STC  RSV+TIAF+F++E+H++E VA MARQYVR++++SVQRVA+A++PS +  Q   + P G+PEA TLARWI  SYR + G DLL++ S+  +S LK +W H+D++MCCSLKA PVFTFANQAGLDMLETTL+ALQDI+LEKI DD GRKAL  EFP+  Q
Sbjct:  560 DEVVLSRDMYLLQLCSGVDENAAGACAQLVFAPIDESFADDAPLLPSGFRVIPLDGKTDAPSATRTLDLASTLEVGSGGTTRASS-DTSSTCNTRSVLTIAFQFSYENHLRESVAAMARQYVRTVVASVQRVAMAIAPSRLGGQIETKNPPGSPEAHTLARWIGRSYRFHTGADLLRTDSQSMDSSLKAMWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEFPKIMQ 810          
BLAST of FC923850 vs. ExPASy Swiss-Prot
Match: HOX33_ORYSJ (Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. japonica GN=HOX33 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.812e-81
Identity = 149/253 (58.89%), Postives = 194/253 (76.68%), Query Frame = 3
Query:    3 SPEDALMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLLSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRATNNYSTNSTCMRSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALSPSNISSQAGLRTPLGTPEALTLARWICHSYRCYLGVDLLKSSSEGSESILKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPRYAQ 761
            S ++ L+ RDM+LLQLCSG+DENA    A+L+FAPID SFADDAPLL SGFR+IPLD+  +  S  RTLDLASALE+GP G  +  +   + TC RSV+TIAF+F++E+H++E VA MAR YVR++++SVQRVA+A++PS +  Q G++ P  +PEALTLA WI  SYR + G D+  S +E ++S L  LW H+DA++CCSLK  P+FTFAN AGLD+LETTLV LQDI+LE I DD GRKAL +EFP+  Q
Sbjct:  555 SHDEVLLSRDMYLLQLCSGVDENATSASAQLVFAPIDESFADDAPLLPSGFRVIPLDTKMDGPSATRTLDLASALEVGPGG-ASRASVEASGTCNRSVLTIAFQFSYENHLRESVAAMARSYVRAVMASVQRVAVAIAPSRLGPQIGMKHPPASPEALTLASWIGRSYRAHTGADIRWSDTEDADSPLALLWKHSDAILCCSLKPAPMFTFANNAGLDILETTLVNLQDISLEMILDDEGRKALCSEFPKIMQ 806          
BLAST of FC923850 vs. ExPASy Swiss-Prot
Match: HOX33_ORYSI (Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. indica GN=HOX33 PE=2 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 1.812e-81
Identity = 149/253 (58.89%), Postives = 194/253 (76.68%), Query Frame = 3
Query:    3 SPEDALMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLLSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRATNNYSTNSTCMRSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALSPSNISSQAGLRTPLGTPEALTLARWICHSYRCYLGVDLLKSSSEGSESILKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPRYAQ 761
            S ++ L+ RDM+LLQLCSG+DENA    A+L+FAPID SFADDAPLL SGFR+IPLD+  +  S  RTLDLASALE+GP G  +  +   + TC RSV+TIAF+F++E+H++E VA MAR YVR++++SVQRVA+A++PS +  Q G++ P  +PEALTLA WI  SYR + G D+  S +E ++S L  LW H+DA++CCSLK  P+FTFAN AGLD+LETTLV LQDI+LE I DD GRKAL +EFP+  Q
Sbjct:  555 SHDEVLLSRDMYLLQLCSGVDENATSASAQLVFAPIDESFADDAPLLPSGFRVIPLDTKMDGPSATRTLDLASALEVGPGG-ASRASVEASGTCNRSVLTIAFQFSYENHLRESVAAMARSYVRAVMASVQRVAVAIAPSRLGPQIGMKHPPASPEALTLASWIGRSYRAHTGADIRWSDTEDADSPLALLWKHSDAILCCSLKPAPMFTFANNAGLDILETTLVNLQDISLEMILDDEGRKALCSEFPKIMQ 806          
BLAST of FC923850 vs. ExPASy Swiss-Prot
Match: HOX29_ORYSI (Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. indica GN=HOX29 PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 9.945e-80
Identity = 154/262 (58.78%), Postives = 198/262 (75.57%), Query Frame = 3
Query:    9 EDALMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLLSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRATNNYSTNSTCM--------RSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALSPSNI-----SSQAGLRTPLGTPEALTLARWICHSYRCYLGVDLLKS--SSEGSESILKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFP 749
            +D L+ RD+FLLQ+ +G++E++ GTC+ELIFAPIDASF+DD+PLL SGFRIIP+DS  +TSSPN TLDLAS LE     +R +       TC         ++VMTIAF+FAF+ H+Q+ VA MARQY+R+IISSVQR+A+ALS S +     ++ A   +P+ TPEA TL RWIC SYR + G +L+KS  ++  +ESILK +WHH  A++CCSLKA+PVFTFANQ+GLDMLETTLVALQD+TLEK+FDD GRK L  E P
Sbjct:  547 QDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSDDSPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRSRISGVNGGGGTCAAAAASSSSKAVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAAAAAAQLSPV-TPEAATLPRWICQSYRFHFGAELIKSVDANSSNESILKAVWHHPSAILCCSLKAMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELP 807          
BLAST of FC923850 vs. ExPASy Swiss-Prot
Match: HOX29_ORYSJ (Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. japonica GN=HOX29 PE=2 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.876e-78
Identity = 153/262 (58.40%), Postives = 196/262 (74.81%), Query Frame = 3
Query:    9 EDALMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLLSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRATNNYSTNSTCM--------RSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALSPSNI-----SSQAGLRTPLGTPEALTLARWICHSYRCYLGVDLLKS--SSEGSESILKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFP 749
            +D L+ RD+FLLQ+ +G++E++ GTC+ELIFAPIDASF+DD+PLL SGFRIIP+DS  +TSSPN TLDLAS LE     +R +        C         ++VMTIAF+FAF+ H+Q+ VA MARQY+R+IISSVQR+A+ALS S +      + A   +P+ TPEA TL RWIC SYR + G +L+KS  ++  +ESILK +WHH  A++CCSLKA+PVFTFANQ+GLDMLETTLVALQD+TLEK+FDD GRK L  E P
Sbjct:  554 QDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSDDSPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRSRISGVNGGGGGCAAAAASSSSKAVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQLSPV-TPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELP 814          
BLAST of FC923850 vs. ExPASy Swiss-Prot
Match: REV_ARATH (Homeobox-leucine zipper protein REVOLUTA OS=Arabidopsis thaliana GN=REV PE=1 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 2.450e-78
Identity = 153/257 (59.53%), Postives = 197/257 (76.65%), Query Frame = 3
Query:    9 EDALMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLLSGFRIIPLDSGKET-----SSPNRTLDLASALEIGPAGNRATNNYSTNSTCMRSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALSPSNISSQAGLRTPLGTPEALTLARWICHSYRCYLGVDLLKSSSEGS-ESILKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPRYAQ 761
            EDA M RD+ LLQ+C+G+DENAVG C+ELIFAPI+  F DDAPL+ SGFR+IP+D+         ++ +RTLDL S+LE+GP+   A+ N S +S+  R ++TIAF+F FE+++QE+VA MA QYVRS+ISSVQRVA+A+SPS IS   G +   G+PEA+TLA+WI  SY  +LG +LL   S GS +S+LK LW H DA++CCSLK  PVF FANQAGLDMLETTLVALQDITLEKIFD+ GRKA+ ++F +  Q
Sbjct:  534 EDAFMSRDVHLLQICTGIDENAVGACSELIFAPINEMFPDDAPLVPSGFRVIPVDAKTGDVQDLLTANHRTLDLTSSLEVGPSPENASGN-SFSSSSSRCILTIAFQFPFENNLQENVAGMACQYVRSVISSVQRVAMAISPSGISPSLGSKLSPGSPEAVTLAQWISQSYSHHLGSELLTIDSLGSDDSVLKLLWDHQDAILCCSLKPQPVFMFANQAGLDMLETTLVALQDITLEKIFDESGRKAICSDFAKLMQ 789          
BLAST of FC923850 vs. ExPASy Swiss-Prot
Match: HOX9_ORYSI (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. indica GN=HOX9 PE=2 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 3.199e-78
Identity = 142/248 (57.26%), Postives = 191/248 (77.02%), Query Frame = 3
Query:    9 EDALMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLLSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRATNNYSTNSTCMRSVMTIAFEFAFESHMQEHVATMARQYVRSIISSVQRVALALSPSNISSQAGLRTPLGTPEALTLARWICHSYRCYLGVDLLKSSSEGSESILKNLWHHTDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPR 752
            +D LM RD+ LLQLC+G+DE ++G+C +L+FAPID  F DDAPL+ SGFR+IPLD   + +   RTLDLAS+LE+G    + T + S +   +RSV+TIAF+F +E H+Q+ VATMARQYVRSI+SSVQRV++A+SPS     AG +   G PEA TLARWIC SY+ +LGV+LL+ + +  E++LK LW + DA++CCS K  PVFTFAN+ GL+MLET+LVALQD++L+KIFD+ GRKAL+ E P+
Sbjct:  542 DDGLMSRDIHLLQLCTGIDEKSMGSCFQLVFAPIDELFPDDAPLISSGFRVIPLDMKTDGTPAGRTLDLASSLEVGSTA-QPTGDASMDDCNLRSVLTIAFQFPYEMHLQDSVATMARQYVRSIVSSVQRVSMAISPSRSGLNAGQKIISGFPEAPTLARWICQSYQFHLGVELLRQADDAGEALLKMLWDYEDAILCCSFKEKPVFTFANEMGLNMLETSLVALQDLSLDKIFDEAGRKALYNEIPK 788          
The following BLAST results are available for this feature:
BLAST of FC923850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ATB15_ARATH4.879e-11984.19Homeobox-leucine zipper protein ATHB-15 OS=Arabido... [more]
ATHB8_ARATH1.808e-8969.57Homeobox-leucine zipper protein ATHB-8 OS=Arabidop... [more]
HOX32_ORYSJ4.924e-8761.90Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
HOX32_ORYSI8.399e-8761.90Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
HOX33_ORYSJ1.812e-8158.89Homeobox-leucine zipper protein HOX33 OS=Oryza sat... [more]
HOX33_ORYSI1.812e-8158.89Homeobox-leucine zipper protein HOX33 OS=Oryza sat... [more]
HOX29_ORYSI9.945e-8058.78Homeobox-leucine zipper protein HOX29 OS=Oryza sat... [more]
HOX29_ORYSJ1.876e-7858.40Homeobox-leucine zipper protein HOX29 OS=Oryza sat... [more]
REV_ARATH2.450e-7859.53Homeobox-leucine zipper protein REVOLUTA OS=Arabid... [more]
HOX9_ORYSI3.199e-7857.26Homeobox-leucine zipper protein HOX9 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionC31709E12EF StrClemenN Citrus clementina cDNA clone C31709E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923850 ID=FC923850; Name=FC923850; organism=Citrus clementina; type=EST; length=765bp
ACTCTCCTGAAGATGCACTAATGCCTAGAGACATGTTTCTCTTGCAACTC
TGCAGTGGGATGGATGAGAATGCTGTTGGTACCTGTGCTGAACTTATATT
TGCTCCCATAGATGCTTCTTTTGCTGATGATGCACCTCTTCTGCTATCTG
GTTTTCGCATTATTCCTCTCGATTCTGGAAAGGAAACCTCCAGTCCAAAT
CGCACCTTGGACCTTGCGTCTGCTCTTGAGATTGGTCCTGCTGGAAATAG
AGCTACAAATAATTACTCTACTAATTCCACCTGTATGAGATCAGTGATGA
CCATAGCATTTGAATTTGCATTTGAAAGTCACATGCAAGAGCATGTGGCA
ACCATGGCTCGGCAATACGTTCGCAGCATTATATCATCTGTTCAGAGGGT
GGCATTAGCCCTATCTCCTTCTAATATAAGTTCACAAGCTGGTCTCCGTA
CACCATTAGGTACTCCAGAAGCACTAACACTTGCTCGTTGGATCTGTCAC
AGTTACAGGTGTTACTTGGGTGTGGATCTGCTTAAATCCAGCAGTGAAGG
AAGTGAATCCATTCTCAAGAACCTTTGGCATCACACAGATGCTGTCATGT
GCTGCTCACTAAAGGCATTGCCTGTTTTCACTTTTGCAAACCAAGCGGGA
CTTGATATGCTTGAGACGACCTTGGTTGCACTGCAAGACATAACCTTGGA
GAAGATATTTGATGATCATGGGCGGAAGGCTCTCTTCGCGGAGTTCCCCA
GATATGCACAGGGCT
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