FC923854

Overview
NameFC923854
Unique NameFC923854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923854 vs. ExPASy Swiss-Prot
Match: Y1927_ARATH (LIM and UIM domain-containing At1g19270 OS=Arabidopsis thaliana GN=At1g19270 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.682e-92
Identity = 165/238 (69.33%), Postives = 196/238 (82.35%), Query Frame = 2 
Query:    8 SCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGEKNGYYHMPETRGLCLSEEQTVTTILRRPRFGSGNQAMNIITEPYKLTRRCDVTAILILYGLPRLLTGTILAHEMMHGWMRLQGFRTLSPDVEEGICQVIAHWWLISQL-XXXXXXXXXXXXXXXXXXXXXXXPKFDKKLGEFFKHQIETDASPVYGDGFRAGQ 718
            SCERMEP++T YV L+DGRKLCLECLDSA+MDT +CQPLYL IQ FYE ++MK+EQ++PLLLVERQALNEAR+GEKNG+YHMPETRGLCLSEEQTV+T+ +R + G+G  A N ITEPYKLTR+C+VTAILIL+GLPRLLTG+ILAHEMMH WMRL+GFRTLS DVEEGICQV+AH WL ++L                         ++++KLGEFFKHQIE+DASPVYGDGFRAG+
Sbjct:  273 SCERMEPRNTRYVELNDGRKLCLECLDSAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQTVSTVRKRSKHGTGKWAGN-ITEPYKLTRQCEVTAILILFGLPRLLTGSILAHEMMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELAAGSTNSNAASSSSSSQGLKKGPRSQYERKLGEFFKHQIESDASPVYGDGFRAGR 509
The following BLAST results are available for this feature:
BLAST of FC923854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1927_ARATH2.682e-9269.33LIM and UIM domain-containing At1g19270 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionC31709F04EF StrClemenN Citrus clementina cDNA clone C31709F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923854 ID=FC923854; Name=FC923854; organism=Citrus clementina; type=EST; length=722bp
GCCGGGCAGTTGTGAGCGAATGGAGCCACAGGACACAGCATATGTTGCGC
TGGATGATGGACGGAAGCTTTGCCTAGAGTGTCTGGACTCTGCAATCATG
GATACCAATGAATGCCAGCCCCTTTATCTTGATATACAAGAATTTTATGA
AAGTATACATATGAAACTGGAGCAGCAAATTCCACTACTCTTGGTTGAAA
GACAAGCACTAAATGAAGCGAGAGATGGAGAAAAAAATGGCTATTATCAC
ATGCCGGAGACCAGAGGACTCTGCCTTTCTGAGGAGCAGACTGTCACAAC
TATTCTACGGCGGCCAAGGTTTGGGTCAGGAAACCAAGCCATGAACATAA
TAACAGAGCCCTACAAACTGACGCGACGCTGTGATGTGACTGCAATTCTC
ATACTGTATGGCCTTCCTAGATTACTTACTGGCACAATCCTAGCTCATGA
GATGATGCATGGTTGGATGCGACTTCAAGGTTTCCGAACTCTCAGCCCAG
ATGTTGAAGAAGGTATTTGTCAGGTTATAGCACACTGGTGGTTAATTTCT
CAGCTCAAGTCCAGCAAAAAGGTCACACCAACCTCCTCATCCTCTGCCGC
TGGAACATCAAAGAAGGGGACAGGACCTAAATTCGATAAAAAACTAGGGG
AGTTTTTTAAACACCAGATTGAAACGGATGCTTCACCAGTGTATGGGGAT
GGATTCAGAGCTGGTCAGCATG
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