FC923857

Overview
NameFC923857
Unique NameFC923857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923857 vs. ExPASy Swiss-Prot
Match: DAPB2_ARATH (Dihydrodipicolinate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 4.247e-108
Identity = 185/230 (80.43%), Postives = 213/230 (92.61%), Query Frame = 2 
Query:    2 VNSCTGKMGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVC 691
            VN C+GKMGKAVIKAAD+AG+ +VP SFG+ EE+GQ VEVCGKEI VHG ++RE VL+SVF+KYP +IVVDYT+P+AVN NAELY KVGVPFVMGTTGGDR RL++T+E S +YAVISPQMGKQVVAFLAAMEIM+EQFPGAF+GYSL+V+ESHQA KLD SGTAKAVISCFQKLGVS+DMDQIQ+IRDPKQQ+E+VGVPEEH+ GHAFH+YHLTSPD+TVSFEFQHNVC
Sbjct:   79 VNGCSGKMGKAVIKAADSAGVNIVPTSFGSVEEAGQTVEVCGKEILVHGPTEREKVLSSVFEKYPELIVVDYTIPSAVNDNAELYGKVGVPFVMGTTGGDRTRLYKTVEESKIYAVISPQMGKQVVAFLAAMEIMSEQFPGAFAGYSLEVMESHQASKLDASGTAKAVISCFQKLGVSYDMDQIQLIRDPKQQIEVVGVPEEHVSGHAFHLYHLTSPDKTVSFEFQHNVC 308
[Close]
BLAST of FC923857 vs. ExPASy Swiss-Prot
Match: DAPB1_ARATH (Dihydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2)

HSP 1 Score: 390.193 bits (1001), Expect = 5.547e-108
Identity = 185/230 (80.43%), Postives = 213/230 (92.61%), Query Frame = 2 
Query:    2 VNSCTGKMGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVC 691
            VN C+GKMGKAVIKAAD+AG+ +VP+SFG+  E GQ+VEVCGKEI VHG ++RE VL+SVF+K+P +IVVDYT+P+AVN NAELYSKVGVPFVMGTTGGDR +L+ET+E + +YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSL V+ESHQA KLD SGTAKAVISCFQ+LGVS+DMDQIQ+IRDPKQQ+EMVGVPEEH+ GHAFH+YHLTSPD+TVSFEFQHNVC
Sbjct:   77 VNGCSGKMGKAVIKAADSAGVNIVPISFGSAGEDGQRVEVCGKEITVHGPTEREKVLSSVFEKHPELIVVDYTIPSAVNDNAELYSKVGVPFVMGTTGGDRNKLYETVEEAKIYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELGVSYDMDQIQLIRDPKQQVEMVGVPEEHISGHAFHLYHLTSPDETVSFEFQHNVC 306
[Close]
BLAST of FC923857 vs. ExPASy Swiss-Prot
Match: DAPB1_ORYSJ (Probable dihydrodipicolinate reductase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB1 PE=2 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 3.729e-96
Identity = 170/230 (73.91%), Postives = 200/230 (86.96%), Query Frame = 2 
Query:    2 VNSCTGKMGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVC 691
            VNSCTGKMGKAV +AA +AGL+LVPVSF   E    KVE+C +EI +   S+ ES+L S+   YP+MIVVDYTVP AVN NAELY K+G+PFVMGTTGG+R  LH+T+E++NVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGY L+V+ESHQA KLD SGTAKAVISCFQKLGVSF++++++ +RDP++QL +VGVPEEHL GHAFHMYHLTSPD+TVSFEFQHNVC
Sbjct:   73 VNSCTGKMGKAVAEAAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAVNANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEEHLSGHAFHMYHLTSPDETVSFEFQHNVC 302
[Close]
BLAST of FC923857 vs. ExPASy Swiss-Prot
Match: DAPB2_ORYSJ (Probable dihydrodipicolinate reductase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.058e-90
Identity = 157/230 (68.26%), Postives = 197/230 (85.65%), Query Frame = 2 
Query:    2 VNSCTGKMGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVC 691
            VN CTGKMG +V +A  ++GL LVP+SF + +   + V V   +++++G S RE VL+SV D++P+++VVDYT P +VN NAELY K+G+PFVMGTTGGDR  L++++++SN YA+ISPQMGKQVVAFLAAMEIMAEQFPGAFSGY L+VLESHQAGKLD SGTAKAVI+CF+KLGVS+DM+++  IRDP+QQLEMVGVPEEH+ GHAFH+YHLTSPD +VSFEFQHNVC
Sbjct:   55 VNGCTGKMGLSVAEAVTSSGLHLVPISFSSRDTLDRTVRVGHTDVRIYGPSAREDVLSSVIDEFPDVVVVDYTAPDSVNANAELYCKLGLPFVMGTTGGDRQLLYKSVQDSNNYALISPQMGKQVVAFLAAMEIMAEQFPGAFSGYHLEVLESHQAGKLDISGTAKAVIACFEKLGVSYDMNRMVKIRDPEQQLEMVGVPEEHIEGHAFHLYHLTSPDDSVSFEFQHNVC 284
The following BLAST results are available for this feature:
BLAST of FC923857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DAPB2_ARATH4.247e-10880.43Dihydrodipicolinate reductase 2, chloroplastic OS=... [more]
DAPB1_ARATH5.547e-10880.43Dihydrodipicolinate reductase 1, chloroplastic OS=... [more]
DAPB1_ORYSJ3.729e-9673.91Probable dihydrodipicolinate reductase 1, chloropl... [more]
DAPB2_ORYSJ3.058e-9068.26Probable dihydrodipicolinate reductase 2, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionC31709F07EF StrClemenN Citrus clementina cDNA clone C31709F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923857 ID=FC923857; Name=FC923857; organism=Citrus clementina; type=EST; length=693bp
GGTAAATAGTTGTACTGGAAAAATGGGGAAGGCTGTTATCAAGGCTGCAG
ATGCTGCAGGACTTGAGCTGGTTCCTGTATCATTTGGCACAGAAGAGGAA
TCTGGGCAAAAGGTGGAAGTGTGCGGGAAAGAGATCCAGGTTCATGGTCT
TTCTGATAGGGAAAGTGTACTTGCATCTGTCTTTGATAAATACCCAAACA
TGATCGTTGTGGACTATACTGTGCCTGCTGCTGTGAATGGTAATGCAGAG
CTATATTCCAAAGTTGGAGTGCCCTTTGTTATGGGAACCACTGGTGGAGA
CAGGGTCAGATTGCATGAGACAATAGAAAATTCAAATGTTTATGCTGTGA
TATCCCCACAAATGGGAAAACAAGTTGTGGCATTCCTTGCAGCTATGGAA
ATAATGGCTGAGCAATTTCCTGGAGCCTTCTCCGGGTATTCTTTGCAGGT
GTTGGAGTCCCATCAAGCTGGTAAATTGGACACATCTGGAACTGCCAAAG
CTGTTATCTCATGCTTTCAGAAACTGGGGGTGTCTTTTGATATGGATCAG
ATACAAATGATTCGGGATCCCAAGCAACAACTTGAGATGGTGGGAGTTCC
AGAGGAGCATTTACCTGGTCATGCATTCCATATGTACCATTTGACATCAC
CTGATCAAACAGTTTCTTTTGAATTTCAGCATAATGTTTGTGG
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