FC923861

Overview
NameFC923861
Unique NameFC923861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923861 vs. ExPASy Swiss-Prot
Match: RPE_SPIOL (Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 7.131e-90
Identity = 170/204 (83.33%), Postives = 184/204 (90.20%), Query Frame = 3
Query:  114 MSTGSLCSST--TQINGFTGGFMLQKT--NLNQPSSLSFTRRRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 713
            MS  SLC ST  +QINGF GG  ++K   + + P+SL+FTRR++ T+VKA++RVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVLNP T LS IE VLDVVDLVLIMSVNPGF
Sbjct:    1 MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGTPLSTIEYVLDVVDLVLIMSVNPGF 204          
BLAST of FC923861 vs. ExPASy Swiss-Prot
Match: RPE_SOLTU (Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 6.674e-88
Identity = 163/199 (81.91%), Postives = 178/199 (89.45%), Query Frame = 3
Query:  117 STGSLCSSTTQINGFTGGFMLQKTNLNQPSSLSFTRRRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 713
            S GS     +QI+GF G   LQK + + P+SL+FTRRRI T+V AS+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGF
Sbjct:    1 SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGF 199          
BLAST of FC923861 vs. ExPASy Swiss-Prot
Match: RPE_ORYSJ (Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 1.262e-78
Identity = 149/168 (88.69%), Postives = 159/168 (94.64%), Query Frame = 3
Query:  210 LSFTRRRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 713
            L+F+  R    V+AS+RVDKFSK+DIIVSPSILSANF+KLGEQVKAVE+AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNPAT L+AI+ VLDVVDLVLIMSVNPGF
Sbjct:   26 LAFSSPRKAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGF 193          
BLAST of FC923861 vs. ExPASy Swiss-Prot
Match: RPE_SYNY3 (Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 8.235e-54
Identity = 102/144 (70.83%), Postives = 124/144 (86.11%), Query Frame = 3
Query:  282 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 713
            +I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T   LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP+T L  +E VL V DL+LIMSVNPGF
Sbjct:    4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGF 147          
BLAST of FC923861 vs. ExPASy Swiss-Prot
Match: RPE_BACSU (Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.377e-47
Identity = 95/143 (66.43%), Postives = 114/143 (79.72%), Query Frame = 3
Query:  285 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 713
            I V+PSILSA+FA LG ++K VE  G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLPLDVHLMI EP++ +P F KAGADI+SVH E  +  HLHRT+  IK+ G KAGVVLNP T +  IE V D +DLVL+M+VNPGF
Sbjct:    2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAKAGADILSVHAE--ACPHLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGF 142          
BLAST of FC923861 vs. ExPASy Swiss-Prot
Match: RPEC_RALEH (Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39
Identity = 81/147 (55.10%), Postives = 109/147 (74.15%), Query Frame = 3
Query:  273 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 713
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +VPN+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+I+S H E S   H+ RT+  I+D G KAG+VLNPAT L  ++  LD +DLVL+MSVNPGF
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLGWLDHTLDQLDLVLLMSVNPGF 156          
BLAST of FC923861 vs. ExPASy Swiss-Prot
Match: RPEP_RALEH (Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.773e-39
Identity = 80/147 (54.42%), Postives = 109/147 (74.15%), Query Frame = 3
Query:  273 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 713
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +V N+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+++S H E S   H+ RT+  I+D G KAG+VLNPAT LS ++  LD +DLVL+MSVNPGF
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLSWLDHTLDKLDLVLLMSVNPGF 156          
BLAST of FC923861 vs. ExPASy Swiss-Prot
Match: RPE_BUCAP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.476e-36
Identity = 75/142 (52.82%), Postives = 104/142 (73.24%), Query Frame = 3
Query:  291 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 713
            ++ SILSA+FA+LGE  K    AG DWIH DVMD  +VPN+T+GP+++ ALR     +P+DVHLM+   +  +P F +AGAD ++ H E  ST H+ RTLN IK+ G KAG+ LNPATSL+ ++ V++ +DL+L+MSVNPGF
Sbjct:    6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVMEKLDLILLMSVNPGF 145          
BLAST of FC923861 vs. ExPASy Swiss-Prot
Match: RPE_AQUAE (Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus GN=rpe PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.929e-36
Identity = 76/142 (53.52%), Postives = 102/142 (71.83%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 713
            +++PSIL+ ++  +GEQ++A    G D +H DVMDG FVPNIT G  ++  +R    LP+D HLMI  P++ +P F++AGA+ +SVH E  +  H+HRTL  IK+LGAKAGVV+NP TSLSAIE  L   D VL+MSVNPGF
Sbjct:    3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPIDAHLMIENPDKYIPKFVEAGANWISVHIE--NNYHIHRTLQLIKELGAKAGVVVNPGTSLSAIEEALYYADYVLLMSVNPGF 142          
BLAST of FC923861 vs. ExPASy Swiss-Prot
Match: RPE_SERMA (Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.843e-35
Identity = 76/143 (53.15%), Postives = 102/143 (71.33%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 713
            +++PSILSA+FA+LGE    V  AG D +H DVMD  +VPN+TIGP+V +ALR      P+DVHLM+   ++ VPDF KAGA  +S H E S   H+ RT+  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGF
Sbjct:    5 LIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNYGITAPIDVHLMVKPVDRIVPDFAKAGASYISFHPEASE--HVDRTIQLIKEHGCKAGLVFNPATPLSYLDYVMDKIDVILLMSVNPGF 145          
The following BLAST results are available for this feature:
BLAST of FC923861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_SPIOL7.131e-9083.33Ribulose-phosphate 3-epimerase, chloroplastic OS=S... [more]
RPE_SOLTU6.674e-8881.91Ribulose-phosphate 3-epimerase, chloroplastic (Fra... [more]
RPE_ORYSJ1.262e-7888.69Ribulose-phosphate 3-epimerase, chloroplastic OS=O... [more]
RPE_SYNY38.235e-5470.83Ribulose-phosphate 3-epimerase OS=Synechocystis sp... [more]
RPE_BACSU4.377e-4766.43Ribulose-phosphate 3-epimerase OS=Bacillus subtili... [more]
RPEC_RALEH2.572e-3955.10Ribulose-phosphate 3-epimerase, chromosomal OS=Ral... [more]
RPEP_RALEH9.773e-3954.42Ribulose-phosphate 3-epimerase, plasmid OS=Ralston... [more]
RPE_BUCAP3.476e-3652.82Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_AQUAE5.929e-3653.52Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus... [more]
RPE_SERMA3.843e-3553.15Ribulose-phosphate 3-epimerase OS=Serratia marcesc... [more]

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Properties
Property NameValue
Genbank descriptionC31709F11EF StrClemenN Citrus clementina cDNA clone C31709F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923861 ID=FC923861; Name=FC923861; organism=Citrus clementina; type=EST; length=713bp
GGCTGAAATTCGGTTAGAGAAAACGAACGAAAACAGATACCATATTTCCT
CTCACTAGCCATAACCAAACCAACAGTTACGTTTTAGAGAGAGAAACAAA
AAAGAGCGTCAAGATGTCTACAGGCTCGCTGTGTTCATCAACGACTCAGA
TCAATGGCTTTACAGGTGGTTTCATGTTGCAGAAAACCAATCTTAATCAG
CCCAGTTCACTTAGTTTTACAAGGAGGAGAATTCATACTATAGTGAAGGC
ATCAGCTCGTGTGGATAAGTTCTCGAAAAGTGATATTATTGTTTCTCCAT
CTATTCTCTCTGCTAATTTCGCGAAGTTAGGCGAGCAGGTAAAAGCAGTG
GAATTGGCTGGTTGTGATTGGATTCATGTTGATGTCATGGATGGTCGTTT
TGTTCCAAACATTACAATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTG
TGACAGACCTTCCTTTGGATGTTCATTTGATGATTGTCGAACCTGAACAA
CGAGTGCCTGATTTTATCAAGGCTGGAGCAGACATAGTCAGCGTCCACTG
TGAGCAATCATCCACCATTCATTTGCACCGCACTCTTAACCAAATAAAAG
ATTTGGGAGCTAAAGCTGGAGTTGTCCTTAACCCTGCTACCTCACTGAGT
GCAATAGAATGTGTCCTTGATGTGGTTGATCTTGTCTTGATCATGTCGGT
GAACCCTGGCTTT
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