FC923893

Overview
NameFC923893
Unique NameFC923893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923893 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2)

HSP 1 Score: 429.098 bits (1102), Expect = 1.211e-119
Identity = 209/244 (85.66%), Postives = 223/244 (91.39%), Query Frame = 3
Query:    3 KFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDTHVKALERAQPKKVGIYNVGTGKGRSVREFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKISLNL 734
            K FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLE++ARH V  LIYSSTCATYGEP+KMPI E TPQ PINPYGKAKKMAED+ILDFSKNSDMAVMILRYFNVI SDPEGRLGEAP+PELREHGRISGACFDAARG+I GL+VKGTDY T DGTCVRDYIDV DLVD HVKALE+A+P+ VGIYNVGTGKGRSV+EFVEACKKAT  +IKV + PRRPGDYAEVYSDP KI  +L
Sbjct:  138 KIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAVARHKVKKLIYSSTCATYGEPDKMPIVEVTPQVPINPYGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAARGVIPGLQVKGTDYKTGDGTCVRDYIDVTDLVDAHVKALEKAKPRNVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDFLPRRPGDYAEVYSDPAKILRDL 381          
BLAST of FC923893 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1)

HSP 1 Score: 428.328 bits (1100), Expect = 2.065e-119
Identity = 211/244 (86.48%), Postives = 222/244 (90.98%), Query Frame = 3
Query:    3 KFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDTHVKALERAQPKKVGIYNVGTGKGRSVREFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKISLNL 734
            K FSENAFDAVMHFAAVAYVGESTL PLKYYHNITSNTL VLE+MARH V  LIYSSTCATYGEPEKMPITE+TPQ PINPYGKAKKMAED+ILDFSKNSDMAVMILRYFNVI SDP GRLGEAPRPELRE GRISGACFDAARG I GL+VKGTDY T+DGTC+RDYIDV DLVD HVKALE+AQP+KVGIYNVGTGKGRSV+EFVEACKKAT   IKV + PRRPGDYAEVYSDPTKI  +L
Sbjct:  163 KIFSENAFDAVMHFAAVAYVGESTLYPLKYYHNITSNTLGVLEAMARHKVKKLIYSSTCATYGEPEKMPITEDTPQVPINPYGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPGGRLGEAPRPELREQGRISGACFDAARGFIPGLQVKGTDYKTSDGTCIRDYIDVTDLVDAHVKALEKAQPRKVGIYNVGTGKGRSVKEFVEACKKATGVEIKVDFLPRRPGDYAEVYSDPTKILKDL 406          
BLAST of FC923893 vs. ExPASy Swiss-Prot
Match: ARAE1_ARATH (UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 3.522e-119
Identity = 209/244 (85.66%), Postives = 222/244 (90.98%), Query Frame = 3
Query:    3 KFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDTHVKALERAQPKKVGIYNVGTGKGRSVREFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKISLNL 734
            K F+ENAFDAVMHFAAVAYVGEST  PLKYYHNITSNTLVVLE+MA HGV TLIYSSTCATYGEP+ MPITEETPQ PINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI SDPEGRLGEAPRPELREHGRISGACFDAARGI+ GL++KGTDY TADGTCVRDYIDV DLVD HVKAL++A+P+KVGIYNVGTGKG SV+EFVEACKKAT   IK+ Y PRR GDYAEVYSDP+KI   L
Sbjct:  139 KIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYGEPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYAEVYSDPSKIRKEL 382          
BLAST of FC923893 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 423.32 bits (1087), Expect = 6.642e-118
Identity = 210/244 (86.07%), Postives = 219/244 (89.75%), Query Frame = 3
Query:    3 KFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDTHVKALERAQPKKVGIYNVGTGKGRSVREFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKISLNL 734
            K FSENAFDAVMHFAAVAYVGEST  PLKYYHNITSNTLVVLE+MA HGV TLIYSSTCATYGEPEKMPITEETPQ PINPYGKAKKMAEDIILDFSKNS MAVMILRYFNVI SDPEGRLGEAPRPEL EHGRISGACFDAARGII GL++KGTDY T DGTCVRDYIDV DLVD HVKALE+A+P+KVGI+NVGTGKG SV+EFVEACKKAT  +IKV Y  RR GDYAEVYSDP KI   L
Sbjct:  138 KIFSENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYGEPEKMPITEETPQVPINPYGKAKKMAEDIILDFSKNSIMAVMILRYFNVIGSDPEGRLGEAPRPELSEHGRISGACFDAARGIIPGLQIKGTDYKTVDGTCVRDYIDVTDLVDAHVKALEKAKPRKVGIFNVGTGKGSSVKEFVEACKKATGVDIKVDYLERRAGDYAEVYSDPRKIKEEL 381          
BLAST of FC923893 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 417.927 bits (1073), Expect = 2.791e-116
Identity = 208/246 (84.55%), Postives = 221/246 (89.84%), Query Frame = 3
Query:    3 KFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN--SDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDTHVKALERAQPKKVGIYNVGTGKGRSVREFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKISLNL 734
            + F+ENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTLVVLE+MA H V TLIYSSTCATYGEPEKMPITE TPQ PINPYGKAKKMAEDIILDFSK+  +DMAVMILRYFNVI SDPEGRLGEAP+PELREHGRISGACFDAA GII GLKVKGTDY T DGTCVRDYIDV DLVD HVKAL +A+  KVGIYNVGTGKGRSV+EFVEACKKAT  +IKV Y PRRPGDYAEVYSDP KI+  L
Sbjct:  141 RIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVVLEAMAAHNVRTLIYSSTCATYGEPEKMPITEGTPQFPINPYGKAKKMAEDIILDFSKSKKADMAVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNKAERGKVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDYFPRRPGDYAEVYSDPAKINSEL 386          
BLAST of FC923893 vs. ExPASy Swiss-Prot
Match: ARAE3_ORYSJ (Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 3.645e-116
Identity = 204/245 (83.27%), Postives = 219/245 (89.39%), Query Frame = 3
Query:    3 KFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN-SDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDTHVKALERAQPKKVGIYNVGTGKGRSVREFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKISLNL 734
            K F+ENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTL++LE+MA HGV TLIYSSTCATYGEPEKMPI E T Q PINPYGKAKKMAEDIILDF+K   DMAVMILRYFNVI SDPEGRLGEAPRPELREHGRISGACFDAA GII GLKVKGTDY T DGTC+RDYIDV DLVD HVKAL +A+P KVGIYNVGTG+GRSV+EFV+ACKKAT  NIK+ Y  RRPGDYAEVYSDPTKI+  L
Sbjct:  132 KIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLLILEAMASHGVKTLIYSSTCATYGEPEKMPIVETTRQLPINPYGKAKKMAEDIILDFTKGRKDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVKGTDYPTTDGTCIRDYIDVTDLVDAHVKALNKAEPSKVGIYNVGTGRGRSVKEFVDACKKATGVNIKIEYLSRRPGDYAEVYSDPTKINTEL 376          
BLAST of FC923893 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 414.075 bits (1063), Expect = 4.030e-115
Identity = 203/240 (84.58%), Postives = 217/240 (90.42%), Query Frame = 3
Query:    3 KFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDTHVKALERAQPKKVGIYNVGTGKGRSVREFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKI 722
            K FSENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTL VLE+MA + V TLIYSSTCATYGEP+ MPITE TPQ PINPYGKAKKMAEDIILDFSK S+MAVMILRYFNVI SDP GRLGEAPRPELREHGRISGACFDAA GII GLKV+GTDY TADGTC+RDYIDV DLVD HVKAL++AQP KVGIYNVGTG GRSV+EFVEACK AT A+IKV +  RRPGDYAEVYSDP+KI
Sbjct:  118 KIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAYNVKTLIYSSTCATYGEPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPGGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKI 357          
BLAST of FC923893 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 1.236e-47
Identity = 104/247 (42.11%), Postives = 144/247 (58.30%), Query Frame = 3
Query:    3 KFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILD-FSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDTHVKALERAQPKKVG--IYNVGTGKGRSVREFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKISLNL 734
            K FSE  FDAV+HFA +  VGES   PL YY+N    T+ +LE MA+HG   L++SS+   YG P+++P TEE P + +NPYG+ K   E+I  D +  + +  +++LRYFN + + P G +GE PR        +       A G    L V G DY+T DGT VRDYI V DL D H+ AL + +  K+G  +YN+GTG G SV E V+A +KA+   I ++   RRPGD   VY+   +    L
Sbjct:   73 KIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHGCKNLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLRYFNPVGAHPSGDIGEDPR---GIPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIHVIDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKKIPLVIAGRRPGDAEVVYASTERAESEL 316          
BLAST of FC923893 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.596e-47
Identity = 103/244 (42.21%), Postives = 140/244 (57.38%), Query Frame = 3
Query:    9 FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDF-SKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDTHVKALERA-QPKKVGIYNVGTGKGRSVREFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKISLNL 734
            F+EN  +AV+HFA +  VGES   PLKYYHN  + T ++ E+M ++GV  +++SS+   YG PE  PITE+ P    NPYG+ K M E I+ D  + +++ +V +LRYFN   + P GR+GE P         +       A G +  L V G DY T DGT VRDYI V DL + HVKALE+         YN+GTG G SV E V+A +K +   +   +  RRPGD A  ++DP K    L
Sbjct:   69 FAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIVFSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNPFGAHPSGRIGEDPN---GIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLAEGHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIATCFADPAKAKREL 309          
BLAST of FC923893 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.785e-46
Identity = 105/247 (42.51%), Postives = 142/247 (57.49%), Query Frame = 3
Query:    3 KFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDTHVKALERAQPKKVG--IYNVGTGKGRSVREFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKISLNL 734
            K FSE  FDAV+HFA +  VGES   PL YY+N    T+ +LE MA++G   L++SS+   YG P+++P TEE+P +  NPYG+ K   E+I  D  + +S+  +++LRYFN + + P G +GE P   L     +       A G    L V GTDY T DGT VRDYI V DL D H+ AL +    K+   +YN+GTG G SV E V A +KA+   I ++   RRPGD   VY+   K    L
Sbjct:   72 KIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLLEVMAQYGCKNLVFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGYIGEDP---LGVPNNLMPYVQQVAVGRRPHLTVFGTDYKTKDGTGVRDYIHVMDLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMVAAFEKASGKKIPLVMAGRRPGDAEVVYASTEKAEREL 315          
The following BLAST results are available for this feature:
BLAST of FC923893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
ARAE3_ARATH1.211e-11985.66Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsi... [more]
ARAE4_ARATH2.065e-11986.48Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsi... [more]
ARAE1_ARATH3.522e-11985.66UDP-arabinose 4-epimerase 1 OS=Arabidopsis thalian... [more]
ARAE2_ARATH6.642e-11886.07Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]
ARAE1_ORYSJ2.791e-11684.55Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]
ARAE3_ORYSJ3.645e-11683.27Probable UDP-arabinose 4-epimerase 3 OS=Oryza sati... [more]
ARAE2_ORYSJ4.030e-11584.58Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
GALE2_ARATH1.236e-4742.11UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
GALE_BACSU3.596e-4742.21UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
GALE3_ARATH1.785e-4642.51UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC31710A11EF StrClemenN Citrus clementina cDNA clone C31710A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923893 ID=FC923893; Name=FC923893; organism=Citrus clementina; type=EST; length=742bp
AAAAATTTTTTTCAGAAAATGCATTTGATGCTGTAATGCATTTTGCAGCT
GTTGCTTATGTTGGAGAAAGCACCCTTGATCCTCTCAAATATTATCACAA
CATTACGTCAAATACCTTGGTAGTATTGGAGTCAATGGCCAGACATGGCG
TGGATACTTTGATATATTCCAGTACATGCGCAACATACGGAGAGCCTGAA
AAGATGCCCATTACTGAGGAAACTCCACAGGCTCCAATTAATCCATATGG
TAAAGCTAAGAAGATGGCAGAAGATATCATCCTGGACTTCTCTAAAAATT
CAGACATGGCAGTTATGATCCTAAGGTACTTCAATGTCATCAGTTCTGAT
CCAGAGGGTAGATTAGGTGAAGCTCCCAGACCTGAATTGCGTGAGCATGG
GCGAATATCAGGTGCATGTTTTGATGCAGCTCGTGGTATTATTGCTGGGC
TGAAGGTCAAAGGAACAGACTACAGTACAGCAGATGGAACTTGTGTTCGT
GATTATATTGACGTCAACGATCTGGTTGACACTCATGTCAAAGCTCTTGA
GAGGGCACAACCTAAGAAAGTTGGAATCTATAATGTTGGCACGGGAAAAG
GGAGATCGGTAAGGGAGTTTGTTGAGGCATGTAAAAAAGCAACATCGGCA
AATATCAAAGTTATATATGAACCTCGCCGCCCAGGTGACTATGCTGAAGT
GTATAGTGACCCGACCAAGATCAGCTTGAACTTACTGGACTG
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