FC923895

Overview
NameFC923895
Unique NameFC923895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.808e-67
Identity = 119/142 (83.80%), Postives = 131/142 (92.25%), Query Frame = 2
Query:   86 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 511
            MAT +TVKDVSPHEFVKAY+AHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLR GLGVG+F RIYGGSKRNGSRPPHFCKSSG +ARHILQQLQ MNI+D++ KGGR+ITSSGQRDLDQVAGRI  A
Sbjct:    1 MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIAAA 142          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.973e-67
Identity = 118/143 (82.52%), Postives = 132/143 (92.31%), Query Frame = 2
Query:   86 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVAP 514
            MAT +TVKDVSPH+FVKAY++HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLR GLGVG+F RIYGGSKRNGSRPPHFCKSSG IARHILQQL+ MNI++++ KGGRRITSSGQRDLDQVAGRI V P
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQVAGRIAVEP 143          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.564e-65
Identity = 116/139 (83.45%), Postives = 130/139 (93.53%), Query Frame = 2
Query:   86 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRI 502
            MAT +TVKDVSPH+FVKAY++HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARKIYLR GLGVG+F RIYGGSKRNGSRPPHFCKSSG IARHILQQL+ M+I++++ KGGRRITSSGQRDLDQVAGRI
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQVAGRI 139          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.017e-64
Identity = 115/140 (82.14%), Postives = 128/140 (91.43%), Query Frame = 2
Query:   89 ATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVV 508
            +TARTVKDV+PHEFVKAYSAHLKRSGKMELP W DIVKTA+FKEL PYDPDWYY RAAS+ARKIYLRQG+GVG F +IYGG +RNGSRPPHFCKSSGAI+R+ILQQLQ M IID++PKGGR ITS G+RDLDQVAGR+ V
Sbjct:    4 STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 143          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.839e-45
Identity = 76/134 (56.72%), Postives = 109/134 (81.34%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRI 502
            +VKDVS HEF +A++A LK+SGKM++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +Y+R   G+GSF +IYGG +R G+ P HFCK++G+I+R +LQ L+ + I++ +P GGRR+TS G+RDLD++A +I
Sbjct:    4 SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTSQGRRDLDRIAAQI 137          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.233e-41
Identity = 76/137 (55.47%), Postives = 106/137 (77.37%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 511
            TVKDV+  EFVKA++A LK+SGK++LP W D+VKTA  KELAPYDPDW+Y+RAAS AR +Y+R G+GVG+  +IYGG KR G++P  F   S  ++R +LQ L+ + +++ +  GGRR+TS GQRDLD++AG++  A
Sbjct:    6 TVKDVNQQEFVKAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKDAAGGRRLTSQGQRDLDRIAGQVATA 142          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.687e-41
Identity = 73/136 (53.68%), Postives = 106/136 (77.94%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVV 508
            TVKDV+  EFVKA +A  K+SGK++ P W D VK  + KELAP+D DWYY+R AS+AR +Y+R G+GVG+ ++IYGG +RNG+RP H+ + S  +AR +LQ L+ + +++ +P GGRR+TS GQRD+D++AG++VV
Sbjct:    5 TVKDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMDRIAGQVVV 140          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_RAT (40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.781e-40
Identity = 74/137 (54.01%), Postives = 104/137 (75.91%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 511
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS ++IYGG +RNG RP HF + S ++AR +LQ L+ + +++ +  GGR++T  GQRDLD++AG++  A
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_MOUSE (40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.781e-40
Identity = 74/137 (54.01%), Postives = 104/137 (75.91%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 511
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS ++IYGG +RNG RP HF + S ++AR +LQ L+ + +++ +  GGR++T  GQRDLD++AG++  A
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 8.839e-40
Identity = 73/137 (53.28%), Postives = 103/137 (75.18%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 511
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS ++IYGG +RNG  P HF + S ++AR +LQ L+ + +++ +  GGR++T  GQRDLD++AG++  A
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141          
The following BLAST results are available for this feature:
BLAST of FC923895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RS193_ARATH3.808e-6783.8040S ribosomal protein S19-3 OS=Arabidopsis thalian... [more]
RS191_ARATH4.973e-6782.5240S ribosomal protein S19-1 OS=Arabidopsis thalian... [more]
RS192_ARATH3.564e-6583.4540S ribosomal protein S19-2 OS=Arabidopsis thalian... [more]
RS19_ORYSJ3.017e-6482.1440S ribosomal protein S19 OS=Oryza sativa subsp. j... [more]
RS19_MYAAR1.839e-4556.7240S ribosomal protein S19 OS=Mya arenaria GN=RPS19... [more]
RS19_BRABE1.233e-4155.4740S ribosomal protein S19 OS=Branchiostoma belcher... [more]
RS19_MYXGL4.687e-4153.6840S ribosomal protein S19 OS=Myxine glutinosa GN=r... [more]
RS19_RAT1.781e-4054.0140S ribosomal protein S19 OS=Rattus norvegicus GN=... [more]
RS19_MOUSE1.781e-4054.0140S ribosomal protein S19 OS=Mus musculus GN=Rps19... [more]
RS19_PONAB8.839e-4053.2840S ribosomal protein S19 OS=Pongo abelii GN=RPS19... [more]

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Properties
Property NameValue
Genbank descriptionC31710B02EF StrClemenN Citrus clementina cDNA clone C31710B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923895 ID=FC923895; Name=FC923895; organism=Citrus clementina; type=EST; length=712bp
GAAACCCTAGAGAGAGAGAGAGCGCAATTCCACCACCTTCTTGCAAAAGC
GAAGCTTTGAGTCGCTCTCCTGCTCTGTTGTGACCATGGCTACAGCTAGG
ACTGTCAAGGACGTGTCTCCTCATGAGTTCGTGAAGGCTTACTCTGCTCA
TCTCAAGCGATCTGGCAAGATGGAACTTCCCCCATGGACTGACATAGTCA
AGACTGCTCAGTTCAAGGAGCTTGCTCCCTACGACCCTGACTGGTACTAT
GTCAGAGCTGCCTCCATGGCAAGGAAAATCTACTTGAGGCAAGGGCTTGG
TGTGGGTTCTTTCAGTAGGATTTATGGTGGAAGTAAGAGGAATGGAAGCC
GTCCACCTCACTTCTGCAAAAGCAGTGGTGCTATTGCTCGCCACATTCTT
CAACAGTTGCAGAACATGAACATTATAGATATTGAGCCCAAGGGTGGAAG
GAGAATTACTTCCAGTGGCCAACGAGACCTTGACCAAGTTGCCGGAAGGA
TTGTCGTTGCTCCTTGAAGCTGCTCGACGGTGATCTTGTTTGATTTATTG
CAGGTTTTTGTTAGTTGATGGAATGATGTTGCATTCTTAAGTAAGTTTTG
ATTCCAAGTGTGGACTTTTTATGATGAACCCAGCTTCAGTTTTGTTGCTT
TTAGATGTTTGACATTTATCTGTAGTATTCACTATAAATTCTGCTATCGA
GAGGCTGTGTTT
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