FC923897

Overview
NameFC923897
Unique NameFC923897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923897 vs. ExPASy Swiss-Prot
Match: BET11_ARATH (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.080e-51
Identity = 100/122 (81.97%), Postives = 112/122 (91.80%), Query Frame = 3 
Query:  192 MNSRRDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 557
            MN RR+ R  + +LFDGIEEGGIRA+SSYSHEI+EH+NERALEGLQDRV LLKRLSGDINEEVDTHNRML+RMGNDMD+SRG LSGTMD+FK VFETKSSRRM TLVASFV +FL++YYLTR
Sbjct:    1 MNPRREPRGGRSSLFDGIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYYLTR 122
[Close]
BLAST of FC923897 vs. ExPASy Swiss-Prot
Match: BET12_ARATH (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 4.872e-36
Identity = 74/129 (57.36%), Postives = 105/129 (81.40%), Query Frame = 3 
Query:  192 MNSRRDYRNSKVALFDGI---EEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR*MIY 569
            MN RR+ R S+ +LFDG+   EEG +RASSSY+H  DE DN+ ALE LQDRV+ LKR++GDI+EEV+ HNR+L+++GN MD++RG++SGT+++FK+VFE KS+R+   L+A FV++FLI+YYL R + Y
Sbjct:    1 MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIMYYLIRLLNY 127
The following BLAST results are available for this feature:
BLAST of FC923897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BET11_ARATH1.080e-5181.97Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET... [more]
BET12_ARATH4.872e-3657.36Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET... [more]
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Properties
Property NameValue
Genbank descriptionC31710B06EF StrClemenN Citrus clementina cDNA clone C31710B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923897 ID=FC923897; Name=FC923897; organism=Citrus clementina; type=EST; length=740bp
GCTCCCTCCGGCTAGCCGCTAGCCTTTGTGTATAAAATCCGAGCGGCATT
TCATCGCCGTCTCCTTTCTCCCACCAGCTTGTCTGCTGCTGCAAGCGAAT
TCCTGCTTCACACCAAAGGAACACAATTGAGAATATCGCGAGGCTGAGCT
TAATTTATCTAGAAGCGAAGAAAGGCTGTGATCTTTGAGTCATGAATTCT
AGAAGGGACTACCGTAATAGTAAAGTCGCACTTTTTGATGGCATTGAGGA
GGGTGGCATCAGAGCCTCCTCTTCTTACTCCCATGAAATTGACGAGCATG
ATAATGAAAGAGCATTGGAAGGATTGCAAGATAGAGTCAATCTTCTGAAG
AGACTCTCAGGTGATATAAATGAAGAGGTTGACACACACAATCGCATGTT
GGAACGGATGGGAAATGATATGGATGCTTCAAGAGGAGTCCTATCAGGAA
CCATGGATAAGTTTAAAATGGTTTTCGAGACCAAATCGAGCAGGAGAATG
TTTACCCTTGTTGCATCATTTGTGGTCATCTTCCTAATTGTATACTATCT
CACTAGGTAAATGATCTATGATGTATTTGATAACGCCAGCAGCTTTATGT
TAGAATTGGGATGACCCCATTTTTATGTGGTTATGTAATCAATCTTACAT
GTTGCATGTAAGGAACTCGTTTGTGGTTGTATAAAGAGTTTGTATTCTAT
GGAATTTGTATTAAAAGCTGAAACAGATACTACATATTAT
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