FC923900

Overview
NameFC923900
Unique NameFC923900
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923900 vs. ExPASy Swiss-Prot
Match: MIS3_SCHPO (Ribosomal RNA assembly protein mis3 OS=Schizosaccharomyces pombe GN=mis3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.752e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:  253 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNL 444
            WD D +IDHWK+E F    ++   LE SSF+TLFP+YREKYL+E WP V  AL ++G++C L+L
Sbjct:   26 WDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVWPHVTRALDKFGITCVLDL 88
The following BLAST results are available for this feature:
BLAST of FC923900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MIS3_SCHPO6.752e-1454.69Ribosomal RNA assembly protein mis3 OS=Schizosacch... [more]
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Properties
Property NameValue
Genbank descriptionC31710B09EF StrClemenN Citrus clementina cDNA clone C31710B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923900 ID=FC923900; Name=FC923900; organism=Citrus clementina; type=EST; length=496bp
GGTTGCAATTTGGGAATTAAAATCTCCGCTGTCACCAGAATGTTTCTCAT
CACTTGCCCTAATTCATAACTCAAACGGCGCCAAAACGGTAGTTGCCGCC
ACAATCTTTCTTAGTGTTGTAATTGTGGTTTTTTGGATTGGTTCTTCCTC
TTCTTTTGTCAAGACGACGCCGTAAAAGGTCTGGTGATGGGAGAGAACAT
GGAAAAGACGGTGAACAAGAAACACAAAGGAAAGCATGACAAGCCGAAGC
CGTGGGATGAGGATCCGAATATCGATCACTGGAAAGTTGAGAAATTTGAT
CCTTTTTGGAACGAAGGAGGCATGCTCGAAGTCAGCTCCTTCTCTACTCT
CTTCCCCCAATACAGAGAGAAATACTTGCAAGAGGCTTGGCCTATGGTGA
AAGGTGCTTTGAAAGAATATGGTGTTTCTTGTGAGCTAAATCTGGGTATG
GAAAATAACAGCTATTAANGAGAAAAAAAAAAAAAAAAAAAAAAAA
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