FC923902

Overview
NameFC923902
Unique NameFC923902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.780e-47
Identity = 93/143 (65.03%), Postives = 112/143 (78.32%), Query Frame = 3
Query:  249 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 674
            DY FK+L++GDSGVGKS +L  FTS  FEE  + TIGVDFKVKY+   GK+ KL IWDTAGQERFRTLTSSYYRGAQGII VYDVTRRDTF +L   W +E D+YST +  IK++V NKVD  ++R V+ +EG +FAR +GCL
Sbjct:    7 DYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKVDLSAQRQVSSEEGHDFARRHGCL 149          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.332e-45
Identity = 92/139 (66.19%), Postives = 110/139 (79.14%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 674
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +K+LVGNK+DKE+ R V + EG+ FAR++  L
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDKEN-REVDRNEGLKFARKHSML 146          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.406e-44
Identity = 91/139 (65.47%), Postives = 109/139 (78.42%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 674
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+ R V + EG+ FAR++  L
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSML 146          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.406e-44
Identity = 91/139 (65.47%), Postives = 109/139 (78.42%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 674
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+ R V + EG+ FAR++  L
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSML 146          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.406e-44
Identity = 91/139 (65.47%), Postives = 109/139 (78.42%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 674
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+ R V + EG+ FAR++  L
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSML 146          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.406e-44
Identity = 91/139 (65.47%), Postives = 109/139 (78.42%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 674
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+ R V + EG+ FAR++  L
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSML 146          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.406e-44
Identity = 91/139 (65.47%), Postives = 109/139 (78.42%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 674
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + V G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+ R V + EG+ FAR++  L
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSML 146          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.001e-44
Identity = 88/139 (63.31%), Postives = 111/139 (79.86%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 674
            K+L+IG+SGVGKSSLLL FT D F+ EL+ TIGVDFKVK + + G + KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVT+RDTFT L + W  E++ Y T  D +K+LVGNK+DK++ R V + EG+ FAR++  L
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDKDN-REVDRNEGLKFARKHSML 146          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RB18A_LYMST (Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.460e-41
Identity = 87/147 (59.18%), Postives = 110/147 (74.83%), Query Frame = 3
Query:  237 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 674
            +QE     K+L+IG+SGVGKSSLLL FT D F+ E + TIGVDFKVK + V G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDV+ + +F  L D W  E++ +ST  D +K+LVGNK+D+ +   VTK EG+ FAR++  L
Sbjct:    3 EQEIITTLKILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKTKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVSSKQSFNKL-DAWLNELETFSTKHDMVKMLVGNKIDRANHE-VTKDEGLKFARKHHML 147          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.781e-39
Identity = 83/143 (58.04%), Postives = 106/143 (74.13%), Query Frame = 3
Query:  243 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG 668
            E D+ FK+L+IGDSGVGKS LLL F  D++ +    TIGVDFK+K +++ GK +KL IWDTAGQERFRT+TSSYYRGAQGII+VYD T +D+FTN+   W  EID Y+  ++  KLLVGNK D  +E+VV   +  +FA  YG
Sbjct:    6 EHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQ-WMGEIDRYAC-ENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYG 146          
The following BLAST results are available for this feature:
BLAST of FC923902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTV3_VOLCA1.780e-4765.03GTP-binding protein yptV3 OS=Volvox carteri GN=YPT... [more]
RAB18_CHICK6.332e-4566.19Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB18_RAT2.406e-4465.47Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB2.406e-4465.47Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE2.406e-4465.47Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_HUMAN2.406e-4465.47Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
RAB18_BOVIN2.406e-4465.47Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]
RB18B_DANRE7.001e-4463.31Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RB18A_LYMST1.460e-4159.18Ras-related protein Rab-18A OS=Lymnaea stagnalis G... [more]
RAB1D_DICDI6.781e-3958.04Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC31710B11EF StrClemenN Citrus clementina cDNA clone C31710B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923902 ID=FC923902; Name=FC923902; organism=Citrus clementina; type=EST; length=675bp
ATAAACGAAACTAATAACAATTACAGCACTGCGACGACAACGATCGCGAT
CTCCATTTTCACCTTTTTCTGCGACCACAGTGAACAGATCCTACTTTTGC
CTATCGTCTTTGTAATTCATTCATCAAATTTCAGTGCTGTTGAGGTGGTG
GTGATTTTGGGGTTTGTGGGATTTGGATTTTGGTGGCAGTTTTTGAGAAA
GAGAGTCAAATTTAGATGGATTCATCATCAGCAAGTCAGCAAGAATTTGA
TTACTTGTTCAAGTTGTTGATGATTGGAGATTCTGGTGTTGGTAAAAGTA
GTCTCCTATTGAGCTTCACTTCTGACAACTTTGAAGAGCTTTCGCCCACT
ATTGGTGTCGATTTTAAGGTGAAATATGTTGATGTTGGGGGGAAGAAATT
GAAACTTGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGA
CTAGTTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTT
ACAAGGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAAT
TGACTTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACA
AAGTTGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAAC
TTTGCGAGGGAATATGGATGCCTTT
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