FC923906

Overview
NameFC923906
Unique NameFC923906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923906 vs. ExPASy Swiss-Prot
Match: GRXS2_ARATH (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.595e-33
Identity = 70/102 (68.63%), Postives = 77/102 (75.49%), Query Frame = 2
Query:  143 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 448
            M+ + KM  ERPVVI+            TL CDFG NPAVYELDE+  GRE+EQ L RLGCSPAVP VFIGGELVGGAN+VMSLHLN SLIPMLKR GA+WV
Sbjct:    1 MDMITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLGCSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102          
BLAST of FC923906 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  143 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 448
            M+++ KM SE+ VVIF            TLF DFGVNP +YELDE+  G+E+EQ L +LGCSP VP VFIGG+LVGGANQVMSLHLNRSL+PMLKRVGA+W+
Sbjct:    1 MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102          
BLAST of FC923906 vs. ExPASy Swiss-Prot
Match: GRXS5_ARATH (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.752e-32
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 2
Query:  143 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 448
            ME + KM SE+ VVIF            TLF DFGVNP +YELDE+  GRE+EQ L +LGCSP VP VFIGG+LVGGANQVMSLHLNRSL+PMLKR GA+W+
Sbjct:    1 MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102          
BLAST of FC923906 vs. ExPASy Swiss-Prot
Match: GRXS7_ARATH (Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 2
Query:  143 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 448
            ME++ KM SE+ +VIF            TLF D GVNP +YELDE+  G+E+EQ L +LGCSP VP VFIGG+LVGGANQVMSLHLNRSLIPMLKRVGA+W+
Sbjct:    1 MEKLQKMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRVGALWL 102          
BLAST of FC923906 vs. ExPASy Swiss-Prot
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.677e-31
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 2
Query:  143 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 448
            ME++ KM SE+ VVIF            TLF D GVNP +YELDE+  G+E+E  L +LGCSP VP VFIGG+LVGGANQVMSLHLNRSLIPMLKR GA+W+
Sbjct:    1 MEKIQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGALWL 102          
BLAST of FC923906 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 64/102 (62.75%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  143 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 448
            ME + KM SE+ VVIF            TLF D GVNP +YELDE+  G+E+E  L +LGCSP VP VFIGG+LVGGANQVMSLHLNRSL+PMLKR GA+W+
Sbjct:    1 MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102          
BLAST of FC923906 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 2
Query:  143 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRL-GCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 448
            M+RV K+ASER VVIF             LFCD GVN  V+ELD+ P G+E+E+ L +L G  P VP VFIGG+LVGG N++MSLHL   LIPMLK  GA+W+
Sbjct:    1 MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGALWL 103          
BLAST of FC923906 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  143 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRL-GCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 448
            M+RV ++A++R VVIF             LFC+ GVNP V ELDE P G+E+E+ L RL G SPAVPAVFIGG LVG  ++VMSLHL+ +L+P+L+  GA+WV
Sbjct:    1 MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGALWV 103          
BLAST of FC923906 vs. ExPASy Swiss-Prot
Match: GRXS1_ARATH (Putative monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  143 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 448
            ME+++ +  ++PVVIF            +L   +G N  VYELDEM  G E+E+ L  LGC P VPAVFIG ELVGGANQ+MSL +   L  +L+R GAIW+
Sbjct:    1 MEKISNLLEDKPVVIFSKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELGCKPTVPAVFIGQELVGGANQLMSLQVRNQLASLLRRAGAIWI 102          
BLAST of FC923906 vs. ExPASy Swiss-Prot
Match: GRC15_ORYSJ (Glutaredoxin-C15 OS=Oryza sativa subsp. japonica GN=GRXC15 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  143 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMP-GGRELEQDL-QRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIWV 448
            MERVAK+++E+ VVIF            +LF D GV  AV+ELD  P  GR++E+DL +RLG SP VPAVFI G+LVG  ++VMSLHL   L+PMLK  GAIW+
Sbjct:    1 MERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104          
The following BLAST results are available for this feature:
BLAST of FC923906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GRXS2_ARATH1.595e-3368.63Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana ... [more]
GRXS4_ARATH5.131e-3264.71Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXS5_ARATH8.752e-3265.69Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana ... [more]
GRXS7_ARATH1.493e-3164.71Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana ... [more]
GRXS8_ARATH9.677e-3163.73Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana ... [more]
GRXS3_ARATH1.651e-3062.75Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRC14_ORYSJ6.717e-2455.34Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GRXC1_ORYSJ8.773e-2454.37Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRXS1_ARATH4.814e-2249.02Putative monothiol glutaredoxin-S1 OS=Arabidopsis ... [more]
GRC15_ORYSJ1.401e-2154.81Glutaredoxin-C15 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC31710C07EF StrClemenN Citrus clementina cDNA clone C31710C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923906 ID=FC923906; Name=FC923906; organism=Citrus clementina; type=EST; length=704bp
GGAACACTAGCTACCTAGGAAATAGTTAGTTTCATCACATTTTTCATACT
ATACAAGCTTGCATTGCATTGCTTTGCCCTCTTTCATCTTCGTTTCTTTA
CTTCTCTAGCATTGTATCCACAATTCAATTAATACTATGGCAATGGAGCG
AGTAGCCAAAATGGCATCAGAGAGGCCAGTGGTGATCTTCAGCAAGAGCT
CTTGCTGCATCTGTCACTCAATCAAGACTCTCTTCTGTGACTTTGGAGTG
AACCCAGCTGTTTATGAGCTGGACGAGATGCCGGGCGGGCGTGAGCTTGA
GCAGGATCTTCAAAGGCTCGGTTGCAGCCCCGCGGTGCCGGCCGTGTTCA
TCGGCGGTGAGCTGGTTGGTGGAGCCAATCAAGTCATGAGTCTTCATCTC
AATCGGTCTTTGATCCCAATGCTTAAAAGGGTTGGAGCAATATGGGTCTG
ATTAAAACTAATTTTTAATCAGTTACGAATCTTTTTGCGCATCGGGCACT
TTTTAATTATAAATTAATAAACATGTGATGTGACTTAGCTAGCTTAGTTG
CATAATATGACATATTAAGAGGATTATTATATACTATATAGGTGTCGGAT
GTCTTGGTTTTAGTCCTAATGAATCTACTAATCACTATGTATCGCGTGAA
TGTCGTCTTTTTGGTATCGTAATGTTGCGGTTTTGTTTGCTAGCAAAAAA
AAAA
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