FC923908

Overview
NameFC923908
Unique NameFC923908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_CITUN (Defender against cell death 1 OS=Citrus unshiu GN=DAD1 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.155e-56
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 2
Query:   44 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            STGKDAQALFHSLRSAYAATPTTLKIIDLY+GFAVFTALIQVVYMAIVGSFPFNSFLS VLSCVGTA+LAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    4 STGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_SOLLC (Defender against cell death 1 OS=Solanum lycopersicum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.340e-51
Identity = 101/112 (90.18%), Postives = 106/112 (94.64%), Query Frame = 2
Query:   44 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            S  KDAQALFHSLRSAYAATPT LKIIDLY+ FA+ TALIQVVYMAIVGSFPFNSFLS VLSC+GTA+LAVCLRIQVNK+NKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    5 SATKDAQALFHSLRSAYAATPTNLKIIDLYVIFAISTALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 116          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_MALDO (Defender against cell death 1 OS=Malus domestica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.379e-50
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 2
Query:   44 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            ST +DA ALF SLRSAY+ATPTTLKIIDLY+GFAV TALIQVVYMAIVGSFPFNSFLS VLSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLH+VIMNFLG
Sbjct:    8 STAQDAVALFDSLRSAYSATPTTLKIIDLYIGFAVSTALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHMVIMNFLG 119          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Arabidopsis thaliana GN=DAD1 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 9.832e-50
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 2
Query:   44 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            ST KDAQ LF SLRSAY+ATPT LKIIDLY+ FAVFTALIQVVYMA+VGSFPFNSFLS VLSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:    4 STSKDAQDLFRSLRSAYSATPTNLKIIDLYVVFAVFTALIQVVYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_BETVE (Defender against cell death 1 OS=Betula verrucosa GN=DAD1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.284e-49
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 2
Query:   44 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            ST KDAQAL  SLRSAYAATP+ LKIIDLY+ FAVFTALIQVVYMAIVGSFPFN+FLS +LSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:    4 STSKDAQALIQSLRSAYAATPSNLKIIDLYVVFAVFTALIQVVYMAIVGSFPFNAFLSGLLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD2_ARATH (Defender against cell death 2 OS=Arabidopsis thaliana GN=DAD2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.677e-49
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 2
Query:   44 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            ST KDAQ LFHSL SAY ATPT LKIIDLY+ FAVFTALIQV YMA+VGSFPFNSFLS VLSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:    4 STSKDAQDLFHSLHSAYTATPTNLKIIDLYVCFAVFTALIQVAYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_PEA (Defender against cell death 1 OS=Pisum sativum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 9.202e-48
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 2
Query:   44 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            ST KDAQ LFH++ SAY+ATPT LKIIDLY+ FAVFTAL+Q VYMA+VG FPFNSFLS VLSCVGTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:    6 STTKDAQDLFHAIWSAYSATPTNLKIIDLYVVFAVFTALLQDVYMALVGPFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLGPERAFADFVLCNLVLHLVIMNFLG 117          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_PICMA (Defender against cell death 1 OS=Picea mariana GN=DAD1 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.965e-47
Identity = 91/112 (81.25%), Postives = 103/112 (91.96%), Query Frame = 2
Query:   44 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            ST K+A AL  SLRSAY+ATPT LKIIDLY+ +A+ TA++QVVYMAIVGSFPFN+FLS VLSC GTA+LAVCLR+QVNK+N+EFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    4 STAKEAHALIASLRSAYSATPTKLKIIDLYVVYAILTAVVQVVYMAIVGSFPFNAFLSGVLSCTGTAVLAVCLRMQVNKENREFKDLPPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSJ (Defender against cell death 1 OS=Oryza sativa subsp. japonica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.790e-47
Identity = 94/108 (87.04%), Postives = 98/108 (90.74%), Query Frame = 2
Query:   56 DAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            DA+ L  SL  AYAATPT LKIIDLY+ FAV TALIQVVYM IVGSFPFNSFLS VLSC+GTA+LAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    7 DAKLLIQSLGKAYAATPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSI (Defender against cell death 1 OS=Oryza sativa subsp. indica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.790e-47
Identity = 94/108 (87.04%), Postives = 98/108 (90.74%), Query Frame = 2
Query:   56 DAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            DA+ L  SL  AYAATPT LKIIDLY+ FAV TALIQVVYM IVGSFPFNSFLS VLSC+GTA+LAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    7 DAKLLIQSLGKAYAATPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
The following BLAST results are available for this feature:
BLAST of FC923908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DAD1_CITUN3.155e-5697.32Defender against cell death 1 OS=Citrus unshiu GN=... [more]
DAD1_SOLLC2.340e-5190.18Defender against cell death 1 OS=Solanum lycopersi... [more]
DAD1_MALDO3.379e-5088.39Defender against cell death 1 OS=Malus domestica G... [more]
DAD1_ARATH9.832e-5087.50Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_BETVE1.284e-4987.50Defender against cell death 1 OS=Betula verrucosa ... [more]
DAD2_ARATH1.677e-4986.61Defender against cell death 2 OS=Arabidopsis thali... [more]
DAD1_PEA9.202e-4884.82Defender against cell death 1 OS=Pisum sativum GN=... [more]
DAD1_PICMA5.965e-4781.25Defender against cell death 1 OS=Picea mariana GN=... [more]
DAD1_ORYSJ7.790e-4787.04Defender against cell death 1 OS=Oryza sativa subs... [more]
DAD1_ORYSI7.790e-4787.04Defender against cell death 1 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionC31710C09EF StrClemenN Citrus clementina cDNA clone C31710C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923908 ID=FC923908; Name=FC923908; organism=Citrus clementina; type=EST; length=555bp
GGAGAGAGAGAGAGAGAGAGATTACAGAGAGGAAATGGCGAGATCGACCG
GCAAAGACGCTCAAGCCCTTTTCCATTCCCTTCGCTCTGCTTATGCTGCC
ACTCCCACAACTCTTAAGATCATCGATCTGTATATGGGTTTCGCGGTTTT
TACTGCCTTAATTCAGGTAGTTTACATGGCTATTGTTGGATCCTTCCCAT
TCAACTCTTTTCTTTCGGAAGTACTTTCTTGTGTTGGGACGGCCATACTT
GCTGTTTGTCTACGTATTCAAGTGAACAAGGACAACAAGGAATTTAAGGA
CCTACCACCAGAGCGAGCTTTTGCGGACTTTGTTCTCTGCAATTTGGTGC
TGCATTTGGTGATCATGAATTTCCTTGGATAAACCTTGACCCTGGGTCAA
CTTAAAATACAATTTTCTTGGTCGATGACAGTGTGACCTAGCTGTAAAAG
TTAGTTACGACATTAATGCAGATATTTTTCATAGAATGTGAACTTACTAT
AAATGAAGACGTTGACCATTTTTGGATCAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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