FC923911

Overview
NameFC923911
Unique NameFC923911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923911 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 39/61 (63.93%), Postives = 42/61 (68.85%), Query Frame = 2
Query:  392 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKCP 574
            DC   CAARC+  SRP +C RAC TCC RC CVPPGT GN E C  CY  +TT GNK KCP
Sbjct:   45 DCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGNKRKCP 104          
BLAST of FC923911 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 2
Query:  392 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKCP 574
            DC   C ARC+   RP +C RAC TCC RC CVPPGTYGN +KC +CY  +TT G + KCP
Sbjct:   39 DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKCP 98          
BLAST of FC923911 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = 2
Query:  392 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKCP 574
            DC   C  RC   SRPN+C RAC +CC RC CVPPGT GN   C  CY  +TTRG + KCP
Sbjct:   40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99          
BLAST of FC923911 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 32/61 (52.46%), Postives = 36/61 (59.02%), Query Frame = 2
Query:  392 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKCP 574
            DC   C  RC   SR  +C RAC +CC RC CVPPGT GN   C  CY  +TT G + KCP
Sbjct:   40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGGRLKCP 99          
BLAST of FC923911 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 29/61 (47.54%), Postives = 33/61 (54.10%), Query Frame = 2
Query:  392 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKCP 574
            DC P C  RC A S    C   C  CC  C CVP G YGN++ C  CY +  T+  KPKCP
Sbjct:   37 DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSC-PCYNNWKTQEGKPKCP 96          
BLAST of FC923911 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 28/62 (45.16%), Postives = 34/62 (54.84%), Query Frame = 2
Query:  389 KDCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKCP 574
            +DC P C  RC   S    C   C  CC +C CVP GTYGN++ C  CY +  T+   PKCP
Sbjct:   52 QDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSC-PCYNNWKTKRGGPKCP 112          
The following BLAST results are available for this feature:
BLAST of FC923911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SNAK2_SOLTU1.978e-1863.93Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH1.282e-1759.02Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH1.200e-1557.38Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH5.576e-1352.46Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
RSI1_SOLLC1.794e-1147.54Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GAST1_SOLLC5.219e-1145.16Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31710C12EF StrClemenN Citrus clementina cDNA clone C31710C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923911 ID=FC923911; Name=FC923911; organism=Citrus clementina; type=EST; length=724bp
GGGGCACCAACCAGGGACTAGCTAGCTTCTCAAACTTTCTTCTTGGTTCC
TTTCGGCTGGGTTCTGTCTTCCAATGGCTTTCAGAGCTGCTCCGCTTCTG
TTGGCCACTTTGCTTTTAGTCTCTACAAGTGTTTTATCCAACAATGGGGA
GGAATATCTGCTAGAAAAGGATACTACTTACCCCAAAACCCCAGTACCTG
CACCAGCTCCTACTAAGGCCCCAGTTAAGCCAATCACTCCACCACCAGTA
GTGAGGCCACCCACCACTTATCCACCACCAGTGAAGCCACCCACAACCAC
TCCCCCACCAGTGACCCCACCTAAAACAGCTCCTGCCCCCCAAGTTCCCT
CTCCGGCATCTCCACCAATGCCTATTGTGAGGTCAAACAAAGATTGCATC
CCACTATGTGCAGCAAGATGCAAGGCACACTCAAGGCCAAACGTTTGTGG
AAGAGCTTGCACTACATGCTGTGTTAGGTGCAAATGTGTTCCACCAGGAA
CTTATGGCAACAGAGAGAAGTGTGGCAAGTGCTACACTGATATGACTACT
CGGGGCAATAAACCCAAGTGCCCTTAAGTTATAAATATTAGCATCTGTTG
AAATTTTATGTTAGCTTAAGTTGACCCTGCATAAGTGTTAAAGAGTAAAT
GGTTTTCTAGTGACTTTCTGTGTCACTGCAAGAATGTGCATGTAGTGTGT
TAAGCCATGGCTGATCTACTTCTG
back to top