FC923915

Overview
NameFC923915
Unique NameFC923915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923915 vs. ExPASy Swiss-Prot
Match: FHY3_ARATH (Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.558e-71
Identity = 139/221 (62.90%), Postives = 163/221 (73.76%), Query Frame = 1
Query:    4 ETDQMQTRVQRYNDLC*RAMKLSEEGSLSQESYGIAFRALEEAVGNCLSVNTSNKNLVEAVTSPTHGLICVEEDNQSRSMXXXXXXXXXXXXXXXXXEQEVMTVGAGAGSQDSLQQMDKLNSRAVTLDGYYGTQPSVQGMVQLNLMAPTRDNYYGNQQTIQGLGQLNSIAPSHDGYYSAQQGMHGLGQMDFFRTPTSFTYGIRDDPNVRTAQLHDDAXRHA 666
            E  Q+QTR+ RYNDLC RA+KL+EE SLSQESY IAF A+E A+GNC  +NTS ++L + VTSPT GLI VEEDN SRS                  EQ+VM V A     +SLQQMDKL+ R V ++ YYGTQ SVQGMVQLNLM PTRDN+YGNQQT+QGL QLNSIAPS+D YY  QQG+HG G +DFFR P +F+Y IRDDPNVRT QLH+DA RH+
Sbjct:  625 EPQQLQTRLLRYNDLCERALKLNEEASLSQESYNIAFLAIEGAIGNCAGINTSGRSLPDVVTSPTQGLISVEEDNHSRSAGKTSKKKNPTKKRKVNPEQDVMPVAA----PESLQQMDKLSPRTVGIESYYGTQQSVQGMVQLNLMGPTRDNFYGNQQTMQGLRQLNSIAPSYDSYYGPQQGIHGQG-VDFFR-PANFSYDIRDDPNVRTTQLHEDASRHS 839          
BLAST of FC923915 vs. ExPASy Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.697e-39
Identity = 96/218 (44.04%), Postives = 138/218 (63.30%), Query Frame = 1
Query:   10 DQMQTRVQRYNDLC*RAMKLSEEGSLSQESYGIAFRALEEAVGNCLSVNTSNKNLVEAVTSPTHGLICVEEDNQSRSMXXXXXXXXXXXXXXXXXEQEVMTVGAGAGSQDSLQQMDKLNSRAVTLDGYYGTQPSVQGMVQLNLMAPTRDNYYGNQQTIQGLGQLNSIAPSHDGYYSAQQGMHGL-GQMDFFRTPTSFTYGIRDDPNVRTAQLHDDAXR 660
            DQ+QTRVQRYNDLC RA +LSEEG +S+E+Y IA R L E + NC+ +N +  N+ E+ +   +G    EE+NQ   M                 +QE   +     SQ SLQ M+ ++S A+ ++GYYG Q +VQG+  LNLM P  + YY +Q+TIQGLGQLNSIAP+ D +++ QQ M G+ GQ+D FR P +FTY ++++ ++ +AQL   + R
Sbjct:  619 DQIQTRVQRYNDLCSRATELSEEGCVSEENYNIALRTLVETLKNCVDMNNARNNITESNSQLNNG--THEEENQ--VMAGVKATKKKTVYRKRKGQQEASQM---LESQQSLQPMETISSEAMDMNGYYGPQQNVQGL--LNLMEPPHEGYYVDQRTIQGLGQLNSIAPAQDSFFTNQQAMSGMVGQID-FRPPPNFTYTLQEE-HLSSAQLPGSSSR 825          
BLAST of FC923915 vs. ExPASy Swiss-Prot
Match: FRS1_ARATH (Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 60/188 (31.91%), Postives = 81/188 (43.09%), Query Frame = 1
Query:    1 DETDQMQTRVQRYNDLC*RAMKLSEEGSLSQESYGIAFRALEEAVGNCLSVNTSNKNLVEAVTSPTHGLICVEEDNQSRSMXXXXXXXXXXXXXXXXXEQEVMTVGAGAGSQDSLQQMDKL------NSRAVTLDGYYGTQPSVQGMVQLNLMAPTRDNYYGNQQTIQGLGQLNSIAPSHDGYYSAQQ 546
            D+TD   T+ QRY DLC R++KLSEE SLS+ESY      L EA+    + +   +NL E+ +     L   EE N +  M                         A  G + SLQ++ K+       +R   LD Y   Q     M Q+N MA  R+ Y    Q I  L Q  SI  +H   Y  +Q
Sbjct:  502 DQTDVESTKAQRYKDLCLRSLKLSEEASLSEESYNAVVNVLNEALRKWENKSNLIQNLEESESVTAQDLPIHEEQNNTYDMNKDDNV-------------------ADTGQEYSLQEVWKVTALQEQRNRYSILDDYLSAQHMSHEMGQINSMASNRNGYCSVHQNIHSL-QGQSI--THPRLYETEQ 667          
The following BLAST results are available for this feature:
BLAST of FC923915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FHY3_ARATH4.558e-7162.90Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidops... [more]
FAR1_ARATH2.697e-3944.04Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis... [more]
FRS1_ARATH4.794e-1231.91Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC31710D06EF StrClemenN Citrus clementina cDNA clone C31710D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923915 ID=FC923915; Name=FC923915; organism=Citrus clementina; type=EST; length=730bp
GACGAAACTGATCAAATGCAAACTAGGGTGCAACGGTACAATGATTTATG
CTAGCGGGCAATGAAATTGAGTGAAGAAGGATCATTATCTCAAGAGAGTT
ACGGTATTGCATTTCGTGCACTAGAAGAAGCTGTTGGAAATTGTTTGAGT
GTAAATACTTCTAATAAGAATCTTGTGGAAGCTGTCACATCCCCAACTCA
TGGTCTGATCTGTGTTGAGGAAGATAACCAAAGTAGAAGTATGAACAAGA
CAAATAAAAGAAAGAATCTCACGAAGAAAAGAAAGTCGAACTCGGAGCAG
GAGGTTATGACTGTAGGGGCAGGGGCGGGGTCTCAAGACAGCTTGCAACA
AATGGACAAATTAAACTCAAGAGCAGTAACTCTAGATGGCTACTATGGCA
CTCAACCAAGTGTGCAAGGAATGGTACAGCTTAATTTAATGGCACCAACA
CGTGATAATTACTATGGGAATCAACAGACGATTCAGGGGCTGGGACAGTT
AAACTCAATTGCACCAAGCCATGATGGTTACTACAGTGCACAGCAAGGCA
TGCATGGGCTGGGACAAATGGATTTTTTCCGGACACCAACTAGTTTCACC
TATGGCATTCGAGATGACCCCAATGTGAGAACAGCACAATTGCATGATGA
CGCATNCAGACATGCATGAAGAGTCCTATTATTGCTGTAAAGGCAACAGG
AAATGAAGTTATTTACATTCTGGGTAGCTG
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