FC923918

Overview
NameFC923918
Unique NameFC923918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923918 vs. ExPASy Swiss-Prot
Match: Y5392_ARATH (Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.662e-41
Identity = 88/203 (43.35%), Postives = 134/203 (66.01%), Query Frame = 2
Query:   29 VLNVLIIGRFI-LAPIVFVVFLI--QKYRKSLKRIDNVEKFLHNQQSWMPKRYSYPEIIAVTNHFTHKLGQGGFGSVYKGQLHTDCLIAVKMLENSKFSAEEFINEVSTIGRIHHVNVVQLLGFCSEGSKRALVYEYMPNGSLDRHIFPKESRGQSFSWERLQEVALGTARGIEYLHNGCDVCILHFDIKPHNILLDHNFIPR 628
            V+ ++++G  I LA  + ++ L+  Q  RK  K+ ++V  F       + K+Y Y E+  +T  F+H +G+GGFG+VY+G L     +AVK+L++ K + ++FINEV+++ +  HVN+V LLGFC EGSKRA++ E++ +GSLD+ I   +S   + +   L  +ALG ARG+EYLH GC   I+HFDIKP NILLD NF P+
Sbjct:  439 VIILIVVGSVIGLATFIVIIMLLIRQMKRKKNKKENSVIMF-----KLLLKQYIYAELKKITKSFSHTVGKGGFGTVYRGNLSNGRTVAVKVLKDLKGNGDDFINEVTSMSQTSHVNIVSLLGFCYEGSKRAIISEFLEHGSLDQFISRNKSLTPNVT--TLYGIALGIARGLEYLHYGCKTRIVHFDIKPQNILLDDNFCPK 634          

HSP 2 Score: 24.6386 bits (52), Expect = 2.662e-41
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  616 FHPKVSDFGLAKFHPK 663
            F PKV+DFGLAK   K
Sbjct:  631 FCPKVADFGLAKLCEK 646          
BLAST of FC923918 vs. ExPASy Swiss-Prot
Match: Y5393_ARATH (Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.211e-40
Identity = 87/188 (46.28%), Postives = 125/188 (66.49%), Query Frame = 2
Query:   71 IVFVVFLIQKYRKSLK--RIDNVEKFLHNQQSWMPKRYSYPEIIAVTNHFTHKLGQGGFGSVYKGQLHTDCLIAVKMLENSKFSAEEFINEVSTIGRIHHVNVVQLLGFCSEGSKRALVYEYMPNGSLDRHIFPKESRGQSFSWERLQEVALGTARGIEYLHNGCDVCILHFDIKPHNILLDHNFIPR 628
            +V ++++ Q  RK+ K  R+   +K L+         Y+Y E+  +T  F++ +G+GGFG+VY G L     +AVK+L++ K SAE+FINEV+++ +  HVN+V LLGFC EGSKRA+VYE++ NGSLD+ +   +S  Q  +   L  +ALG ARG+EYLH GC   I+HFDIKP NILLD N  P+
Sbjct:  459 VVLMLWMRQMKRKNRKEERVVMFKKLLN--------MYTYAELKKITKSFSYIIGKGGFGTVYGGNLSNGRKVAVKVLKDLKGSAEDFINEVASMSQTSHVNIVSLLGFCFEGSKRAIVYEFLENGSLDQFMSRNKSLTQDVT--TLYGIALGIARGLEYLHYGCKTRIVHFDIKPQNILLDGNLCPK 636          

HSP 2 Score: 24.6386 bits (52), Expect = 2.211e-40
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  622 PKVSDFGLAKFHPK 663
            PKVSDFGLAK   K
Sbjct:  635 PKVSDFGLAKLCEK 648          
BLAST of FC923918 vs. ExPASy Swiss-Prot
Match: KPRO_MAIZE (Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.928e-33
Identity = 76/165 (46.06%), Postives = 101/165 (61.21%), Query Frame = 2
Query:  170 KRYSYPEIIAVTNHFTHKLGQGGFGSVYKGQLHTDCLIAVKMLENSKFSAEEFINEVSTIGRIHHVNVVQLLGFCSEGSKRALVYEYMPNGSLDRHIFPKESRGQSFSWERLQEVALGTARGIEYLHNGCDVCILHFDIKPHNILLDHNFIPRSQTSALQSFIPR 664
            +RYSY E++  T  F  +LG+G  G+VYKG L  D  +AVK LEN +   E F  E+S IGRI+H+N+V++ GFCSEGS R LV EY+ NGSL   +F  E       WE    +ALG A+G+ YLH+ C   ++H D+KP NILLD  F P+     L   + R
Sbjct:  522 RRYSYRELVKATRKFKVELGRGESGTVYKGVLEDDRHVAVKKLENVRQGKEVFQAELSVIGRINHMNLVRIWGFCSEGSHRLLVSEYVENGSLANILF-SEGGNILLDWEGRFNIALGVAKGLAYLHHECLEWVIHCDVKPENILLDQAFEPKITDFGLVKLLNR 685          
BLAST of FC923918 vs. ExPASy Swiss-Prot
Match: Y4245_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20450 OS=Arabidopsis thaliana GN=At4g20450 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 77/188 (40.96%), Postives = 117/188 (62.23%), Query Frame = 2
Query:   59 ILAPIVFVVFLIQKYRKSLKRIDNVEKFLHNQQSWMPKRYSYPEIIAVTNHFTHKLGQGGFGSVYKGQLHTDCLIAVKML-ENSKFSAEEFINEVSTIGRIHHVNVVQLLGFCSEGSKRALVYEYMPNGSLDRHIFPKESRGQSFSWERLQEVALGTARGIEYLHNGCDVCILHFDIKPHNILLDHNF 619
            I+A ++ V  L+ + +K  K   +    + N++S     Y+Y E+  +TN+F   LG+GGFG VY G ++ +  +AVK+L E+S    ++F  EV  + R+HH+N+V L+G+C EG    L+YEYM NG+L +H+  + SR    SWE    +A  TA+G+EYLH GC   ++H DIK  NILLD+NF
Sbjct:  549 IIAVLLLVNILLLRKKKPSKA--SRSSMVANKRS-----YTYEEVAVITNNFERPLGEGGFGVVYHGNVNDNEQVAVKVLSESSAQGYKQFKAEVDLLLRVHHINLVTLVGYCDEGQHLVLIYEYMSNGNLKQHLSGENSR-SPLSWENRLRIAAETAQGLEYLHIGCKPPMIHRDIKSMNILLDNNF 728          
BLAST of FC923918 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.419e-33
Identity = 86/226 (38.05%), Postives = 122/226 (53.98%), Query Frame = 2
Query:   32 LNVLIIGRFI-LAPIVFVVFLIQKYRKSLKRIDNVEKFLHNQQSWMP---------------------KRYSYPEIIAVTNHFTHKL--GQGGFGSVYKGQLHTDC-LIAVKMLE-NSKFSAEEFINEVSTIGRIHHVNVVQLLGFCSEGSKRALVYEYMPNGSLDRHIFPKESRGQ-SFSWERLQEVALGTARGIEYLHNGCDVCILHFDIKPHNILLDHNFIPR 628
            + + ++G  + LA  V  V +I K +K  K   N         SW P                     +R+S  EI + TN F  KL  G GGFGSVYKGQ+     L+AVK LE  S   A+EF  E+  + ++ HV++V L+G+C E ++  LVYEYMP+G+L  H+F ++       SW+R  E+ +G ARG++YLH G    I+H DIK  NILLD NF+ +
Sbjct:  444 ITLAVVGSLVVLAMFVVGVLVIMKKKKKSKPSTN--------SSWCPLPHGTDSTNTKPAKSLPADLCRRFSIFEIKSATNDFEDKLIIGVGGFGSVYKGQIDGGATLVAVKRLEITSNQGAKEFETELEMLSKLRHVHLVSLIGYCDEDNEMVLVYEYMPHGTLKDHLFRRDKTSDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVTK 661          

HSP 2 Score: 21.557 bits (44), Expect = 6.419e-33
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  616 FHPKVSDFGLAKFHP 660
            F  KVSDFGL++  P
Sbjct:  658 FVTKVSDFGLSRVGP 672          
BLAST of FC923918 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.784e-32
Identity = 79/200 (39.50%), Postives = 118/200 (59.00%), Query Frame = 2
Query:   29 VLNVLIIGRFILAPIVFVVFLIQKYRKSLKRIDNVEKFLHNQQS--WMPKRYSYPEIIAVTNHFTHKLGQGGFGSVYKGQLHTDCLIAVKMLENSKFSA-EEFINEVSTIGRIHHVNVVQLLGFCSEGSKRALVYEYMPNGSLDRHIFPKESRGQSFSWERLQEVALGTARGIEYLHNGCDVCILHFDIKPHNILLDHNF 619
            V +VLII    +A ++ ++   ++    +  +  V+  L N+ S     KR++Y E+ A+T++F   LG+GGFG VY G L+    IAVK+L  S     +EF  EV  + R+HHVN+V L+G+C E S  AL+YEY PNG L +H+   E  G    W    ++ + TA+G+EYLH GC   ++H D+K  NILLD +F
Sbjct:  516 VASVLII----IAVLILILVFKKRRPTQVDSLPTVQHGLPNRPSIFTQTKRFTYSEVEALTDNFERVLGEGGFGVVYHGILNGTQPIAVKLLSQSSVQGYKEFKAEVELLLRVHHVNLVSLVGYCDEESNLALLYEYAPNGDLKQHL-SGERGGSPLKWSSRLKIVVETAQGLEYLHTGCKPPMVHRDVKTTNILLDEHF 710          
BLAST of FC923918 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.637e-32
Identity = 68/151 (45.03%), Postives = 99/151 (65.56%), Query Frame = 2
Query:  170 KRYSYPEIIAVTNHFTHKLGQGGFGSVYKGQLHTDCLIAVKMLENSKFSA-EEFINEVSTIGRIHHVNVVQLLGFCSEGSKRALVYEYMPNGSLDRHIFPKESRGQSFSWERLQEVALGTARGIEYLHNGCDVCILHFDIKPHNILLDHNF 619
            K+++Y E++ +TN+F   LG+GGFG VY G ++    +AVKML +S     ++F  EV  + R+HH N+V L+G+C EG K AL+YEYM NG LD H+  K   G   +W    ++AL  A+G+EYLHNGC   ++H D+K  NILL+ +F
Sbjct:  565 KKFTYAEVLTMTNNFQKILGKGGFGIVYYGSVNGTEQVAVKMLSHSSAQGYKQFKAEVELLLRVHHKNLVGLVGYCEEGDKLALIYEYMANGDLDEHMSGKRG-GSILNWGTRLKIALEAAQGLEYLHNGCKPLMVHRDVKTTNILLNEHF 714          
BLAST of FC923918 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.310e-32
Identity = 71/158 (44.94%), Postives = 102/158 (64.56%), Query Frame = 2
Query:  170 KRYSYPEIIAVTNHFTHKL--GQGGFGSVYKGQLHTDC-LIAVKMLE-NSKFSAEEFINEVSTIGRIHHVNVVQLLGFCSEGSKRALVYEYMPNGSLDRHIFPKESRGQS-FSWERLQEVALGTARGIEYLHNGCDVCILHFDIKPHNILLDHNFIPR 628
            +R+S  EI + TN F  KL  G GGFGSVYKG++     L+AVK LE  S   A+EF  E+  + ++ HV++V L+G+C + ++  LVYEYMP+G+L  H+F ++       SW+R  E+ +G ARG++YLH G    I+H DIK  NILLD NF+ +
Sbjct:  511 RRFSIYEIKSATNDFEEKLIIGVGGFGSVYKGRIDGGATLVAVKRLEITSNQGAKEFDTELEMLSKLRHVHLVSLIGYCDDDNEMVLVYEYMPHGTLKDHLFRRDKASDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVAK 668          

HSP 2 Score: 21.557 bits (44), Expect = 5.310e-32
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  616 FHPKVSDFGLAKFHP 660
            F  KVSDFGL++  P
Sbjct:  665 FVAKVSDFGLSRVGP 679          
BLAST of FC923918 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 6.900e-32
Identity = 79/199 (39.70%), Postives = 116/199 (58.29%), Query Frame = 2
Query:   41 LIIGRFILAPIVFVVFLIQKYRKSLKRIDNVEKFLHNQQSWMPKRYSYPEIIAVTNHF--THKLGQGGFGSVYKGQLHTDCLIAVKMLE-NSKFSAEEFINEVSTIGRIHHVNVVQLLGFCSEGSKRALVYEYMPNGSLDRHIFPKESRGQSFSWERLQEVALGTARGIEYLHNGCDVCILHFDIKPHNILLDHNFIPR 628
            +I+G  +L+ I  VV  I   RK  KR  + E+ L       P  ++Y E+ + T  F  ++KLG+GGFG VYKG+L+    +AVK+L   S+    +F+ E+  I  + H N+V+L G C EG  R LVYEY+PNGSLD+ +F +++      W    E+ LG ARG+ YLH    + I+H D+K  NILLD   +P+
Sbjct:  640 VIVGVGLLSIISGVVIFI--IRKRRKRYTDDEEIL--SMDVKPYTFTYSELKSATQDFDPSNKLGEGGFGPVYKGKLNDGREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFGEKT--LHLDWSTRYEICLGVARGLVYLHEEARLRIVHRDVKASNILLDSKLVPK 832          

HSP 2 Score: 25.0238 bits (53), Expect = 6.900e-32
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  622 PKVSDFGLAKFH 657
            PKVSDFGLAK +
Sbjct:  831 PKVSDFGLAKLY 842          
BLAST of FC923918 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.912e-32
Identity = 78/207 (37.68%), Postives = 117/207 (56.52%), Query Frame = 2
Query:   59 ILAPIVFVV--------FLIQKYRK----------SLKRIDNVEKFLHNQQSWMPK--RYSYPEIIAVTNHFTHKLGQGGFGSVYKGQLHTDCLIAVKMLENSKFSA-EEFINEVSTIGRIHHVNVVQLLGFCSEGSKRALVYEYMPNGSLDRHIFPKESRGQSFSWERLQEVALGTARGIEYLHNGCDVCILHFDIKPHNILLDHN 616
            I+A + FVV        F I K +K          S  ++  V     ++ + M K  R++Y E++ +TN+F   LG+GGFG VY G ++    +AVKML +S     +EF  EV  + R+HH N+V L+G+C EG   AL+YEYM NG L  H+  K   G   +WE   ++ + +A+G+EYLHNGC   ++H D+K  NILL+ +
Sbjct:  523 IVASVAFVVVLGSALAFFFIFKKKKTSNSQDLGPSSYTQVSEVRTIRSSESAIMTKNRRFTYSEVVTMTNNFERVLGKGGFGMVYHGTVNNTEQVAVKMLSHSSSQGYKEFKAEVELLLRVHHKNLVGLVGYCDEGENLALIYEYMANGDLREHMSGKRG-GSILNWETRLKIVVESAQGLEYLHNGCKPPMVHRDVKTTNILLNEH 728          

HSP 2 Score: 22.7126 bits (47), Expect = 6.912e-32
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  619 HPKVSDFGLAKFHPKEND 672
            H K++DFGL++  P E +
Sbjct:  730 HAKLADFGLSRSFPIEGE 747          
The following BLAST results are available for this feature:
BLAST of FC923918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
Y5392_ARATH2.662e-4143.35Probable receptor-like protein kinase At5g39020 OS... [more]
Y5393_ARATH2.211e-4046.28Probable receptor-like protein kinase At5g39030 OS... [more]
KPRO_MAIZE1.928e-3346.06Putative receptor protein kinase ZmPK1 OS=Zea mays... [more]
Y4245_ARATH3.289e-3340.96Probable LRR receptor-like serine/threonine-protei... [more]
Y5900_ARATH6.419e-3338.05Putative receptor-like protein kinase At5g39000 OS... [more]
Y2289_ARATH2.784e-3239.50Probable LRR receptor-like serine/threonine-protei... [more]
Y5181_ARATH3.637e-3245.03Probable LRR receptor-like serine/threonine-protei... [more]
Y5389_ARATH5.310e-3244.94Probable receptor-like protein kinase At5g38990 OS... [more]
Y5614_ARATH6.900e-3239.70Probable LRR receptor-like serine/threonine-protei... [more]
RLK6_ARATH6.912e-3237.68Receptor-like protein kinase At3g21340 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC31710D09EF StrClemenN Citrus clementina cDNA clone C31710D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923918 ID=FC923918; Name=FC923918; organism=Citrus clementina; type=EST; length=676bp
GTTCTCCTTACCAGGGTTTCCATTCGATGTTCTGAATGTTCTGATAATTG
GTAGATTTATTCTTGCTCCAATAGTCTTTGTCGTGTTCCTTATCCAAAAG
TACAGAAAATCATTGAAGAGGATTGATAATGTGGAGAAATTTCTGCACAA
TCAGCAATCGTGGATGCCTAAAAGGTATTCTTACCCGGAGATAATTGCCG
TGACAAACCACTTCACTCATAAATTAGGCCAAGGTGGCTTTGGTTCGGTT
TATAAAGGACAACTTCATACGGATTGCTTGATTGCTGTTAAGATGCTGGA
GAACTCCAAGTTCAGTGCGGAGGAATTCATCAATGAAGTTTCAACAATTG
GTAGAATTCACCACGTTAATGTAGTCCAGCTATTGGGGTTCTGTTCCGAG
GGATCCAAACGGGCACTTGTGTACGAGTATATGCCCAATGGATCACTCGA
TAGGCATATCTTTCCCAAGGAGAGTAGAGGCCAATCTTTTAGTTGGGAGA
GACTCCAGGAAGTTGCTTTAGGAACTGCCCGTGGGATCGAGTATTTACAC
AACGGATGTGATGTCTGCATTCTTCATTTTGACATTAAGCCTCACAACAT
CCTGCTAGATCATAATTTCATCCCAAGGTCTCAGACTTCGGCCTTGCAAA
GTTTCATCCCAAGGAAAATGATTTTG
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