FC923919

Overview
NameFC923919
Unique NameFC923919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923919 vs. ExPASy Swiss-Prot
Match: YVRI_CAEEL (GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 58/177 (32.77%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  169 CFLSGFVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCI-ESLVYEHKYSH-WETCFDKLELD---PKPIVDCYTSGYGTQLELKYAAETNSLVP-PHQYVPWVVVDG 681
            C  + F    R +    N K+ + +  E+LCP   NF+   L  I    +  + V++ L P+GNAK+  + T  CQHG  EC +N  E C IDS  +     P + CI ESL  + +++   + CF+KL++     +    C  S  G  L+ K AA T ++ P  H++VPWV+++G
Sbjct:   58 CGFASFCDKHRAATH--NQKINITVLIEALCPDCQNFLTKQLYPIVFK-NFANYVNIELVPFGNAKVLEDGTIKCQHGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQRLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIING 230          
BLAST of FC923919 vs. ExPASy Swiss-Prot
Match: GILT_HUMAN (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 56/158 (35.44%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  229 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK---IRANSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSHWETCFDKLE--LDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQP 687
            V + LYYE+LC     F+I  L   +  + ++ I+++ L P+GNA+   +     F CQHG  EC  N VEAC +D   ++   F  I C+E   +E        C       L P  I++C     G QL    A  T++L PPH+YVPWV V+G+P
Sbjct:   73 VNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLDEL-DMELAFLTIVCMEE--FEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKP 225          
BLAST of FC923919 vs. ExPASy Swiss-Prot
Match: YKJ2_CAEEL (GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 48/169 (28.40%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  193 ASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANST---FDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSHWETCFDKLELDP---KPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 681
            A  T    V + VKL +Y E+ CP ++ F    L K ++ +  L+ ++L++ P+G A+           CQHGP+EC +N +  C ID +   +++ P + C++      KYS  E      E  P   + + +C +   G +L      +T SL P   ++PW+V++G
Sbjct:  127 AGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQG-----KYSLDEAMKCVTENYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVING 290          
The following BLAST results are available for this feature:
BLAST of FC923919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YVRI_CAEEL7.518e-1832.77GILT-like protein F37H8.5 OS=Caenorhabditis elegan... [more]
GILT_HUMAN1.675e-1735.44Gamma-interferon-inducible lysosomal thiol reducta... [more]
YKJ2_CAEEL1.467e-1328.40GILT-like protein C02D5.2 OS=Caenorhabditis elegan... [more]
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Properties
Property NameValue
Genbank descriptionC31710D10EF StrClemenN Citrus clementina cDNA clone C31710D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923919 ID=FC923919; Name=FC923919; organism=Citrus clementina; type=EST; length=725bp
GACAGAGTCTGTAACGTAGTTTTGTCCCGTAACTAAACCATTCTCGCACT
TTTTCACTTAAGAAGAAAGGGGAAAAAAAAATATCCCTAATTTACGGATT
CATCTATGGCTTCTTCTTCTTATTCCTCAACAAAAGCCTTATCTCTTGTC
TTTTACATTACCTTGTTCTGCTTCTTGTCTGGCTTTGTTTCAGCTTCTAG
AACTTCACCTTCAGATGTCAACAGTAAAGTCAAGTTAGGTCTGTACTACG
AGTCTTTGTGTCCATACAGTGCCAATTTCATTATCAATTACTTGGTTAAA
ATCTTTGAAGATGTTGATCTGTTATCCATCGTTGATCTCCATCTTTCTCC
CTGGGGGAATGCCAAAATCAGAGCCAACAGCACCTTTGATTGCCAGCATG
GCCCTTCTGAATGCTTGCTGAACACTGTGGAAGCTTGTGCGATTGATAGT
TGGCCTGAATTGAACAAGCATTTCCCGTTTATCTACTGCATTGAGAGTTT
AGTGTACGAGCATAAGTATTCTCACTGGGAAACATGCTTTGATAAATTGG
AACTGGATCCGAAGCCAATTGTTGATTGCTATACCAGTGGATATGGAACA
CAGCTTGAGTTAAAATATGCAGCTGAGACAAATTCCCTTGTGCCTCCTCA
TCAATATGTGCCTTGGGTTGTTGTGGATGGACAGCCACTGTATGAGGACT
ACGAAAATTTGTAGCTATATCTGCA
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