FC923920
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3_ARATH (Paired amphipathic helix protein Sin3 OS=Arabidopsis thaliana GN=SIN3 PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 4.057e-31 Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 2 Query: 443 AQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITL 673 AQKLTTNDALAYLKAVKD FQD+R KYD+FLEVMK+FK+ R+DTAGVI RVKELFKGH++LILGFNTFLPKG+EITL Sbjct: 30 AQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELFKGHQELILGFNTFLPKGFEITL 106
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20 Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 2 Query: 452 LTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITL 673 +TT DAL YLKAVKD F+D EKYD FLEV+ D K +DT+GVIAR+K+LFKGH DL+LGFNT+L K Y+IT+ Sbjct: 304 VTTGDALNYLKAVKDKFEDS-EKYDTFLEVLNDCKHQGVDTSGVIARLKDLFKGHDDLLLGFNTYLSKEYQITI 376
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3A_MOUSE (Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18 Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 2 Query: 446 QKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEI 667 Q+L DAL+YL VK F + + Y+DFL++MK+FK+ IDT GVI+RV +LFKGH DLI+GFNTFLP GY+I Sbjct: 119 QRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKI 192
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3A_HUMAN (Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18 Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 2 Query: 446 QKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEI 667 Q+L DAL+YL VK F + + Y+DFL++MK+FK+ IDT GVI+RV +LFKGH DLI+GFNTFLP GY+I Sbjct: 119 QRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKI 192
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: PST3_SCHPO (Paired amphipathic helix protein pst3 OS=Schizosaccharomyces pombe GN=pst3 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18 Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 2 Query: 452 LTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPL 679 L NDAL+YL+ VK F ++RE Y+ FLE+M+DFK+ +DT GVI RV ELF G+ LI GFNTFLP GY+I + L Sbjct: 113 LDVNDALSYLELVKYYFSERREIYNRFLEIMRDFKSQALDTLGVINRVSELFNGYPQLIEGFNTFLPSGYKIEVQL 188
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3_YEAST (Transcriptional regulatory protein SIN3 OS=Saccharomyces cerevisiae GN=SIN3 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15 Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 2 Query: 452 LTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEI 667 L DAL+YL+ VK F + + Y+ FL++MKDFK+ IDT GVI RV LF+G+ LI GFNTFLP+GY I Sbjct: 219 LNVKDALSYLEQVKFQFSSRPDIYNLFLDIMKDFKSQAIDTPGVIERVSTLFRGYPILIQGFNTFLPQGYRI 290
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3B_MOUSE (Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14 Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 2 Query: 464 DALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLP 676 DAL YL VK F Y+ FLE+MK+FK+ IDT GVI RV +LF H DLI+GFN FLP GY I +P Sbjct: 36 DALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIP 106
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3B_HUMAN (Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14 Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 2 Query: 464 DALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLP 676 DAL YL VK F Y+ FLE+MK+FK+ IDT GVI RV +LF H DLI+GFN FLP GY I +P Sbjct: 43 DALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIP 113
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: PST1_SCHPO (Paired amphipathic helix protein pst1 OS=Schizosaccharomyces pombe GN=pst1 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14 Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 2 Query: 446 QKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITL 673 ++L DAL+YL VK F + E Y++FL++MK+FK+ I+T VI RV +LF G+ +LI GFNTFLP GY I + Sbjct: 178 RQLNVTDALSYLDLVKLQFHQEPEIYNEFLDIMKEFKSQAIETPEVITRVSKLFAGYPNLIQGFNTFLPPGYSIEI 253 The following BLAST results are available for this feature:
BLAST of FC923920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923920 ID=FC923920; Name=FC923920; organism=Citrus clementina; type=EST; length=679bpback to top |