FC923920

Overview
NameFC923920
Unique NameFC923920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3_ARATH (Paired amphipathic helix protein Sin3 OS=Arabidopsis thaliana GN=SIN3 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.057e-31
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = 2
Query:  443 AQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITL 673
            AQKLTTNDALAYLKAVKD FQD+R KYD+FLEVMK+FK+ R+DTAGVI RVKELFKGH++LILGFNTFLPKG+EITL
Sbjct:   30 AQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELFKGHQELILGFNTFLPKGFEITL 106          
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 2
Query:  452 LTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITL 673
            +TT DAL YLKAVKD F+D  EKYD FLEV+ D K   +DT+GVIAR+K+LFKGH DL+LGFNT+L K Y+IT+
Sbjct:  304 VTTGDALNYLKAVKDKFEDS-EKYDTFLEVLNDCKHQGVDTSGVIARLKDLFKGHDDLLLGFNTYLSKEYQITI 376          
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3A_MOUSE (Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  446 QKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEI 667
            Q+L   DAL+YL  VK  F  + + Y+DFL++MK+FK+  IDT GVI+RV +LFKGH DLI+GFNTFLP GY+I
Sbjct:  119 QRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKI 192          
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3A_HUMAN (Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  446 QKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEI 667
            Q+L   DAL+YL  VK  F  + + Y+DFL++MK+FK+  IDT GVI+RV +LFKGH DLI+GFNTFLP GY+I
Sbjct:  119 QRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKI 192          
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: PST3_SCHPO (Paired amphipathic helix protein pst3 OS=Schizosaccharomyces pombe GN=pst3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 2
Query:  452 LTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPL 679
            L  NDAL+YL+ VK  F ++RE Y+ FLE+M+DFK+  +DT GVI RV ELF G+  LI GFNTFLP GY+I + L
Sbjct:  113 LDVNDALSYLELVKYYFSERREIYNRFLEIMRDFKSQALDTLGVINRVSELFNGYPQLIEGFNTFLPSGYKIEVQL 188          
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3_YEAST (Transcriptional regulatory protein SIN3 OS=Saccharomyces cerevisiae GN=SIN3 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  452 LTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEI 667
            L   DAL+YL+ VK  F  + + Y+ FL++MKDFK+  IDT GVI RV  LF+G+  LI GFNTFLP+GY I
Sbjct:  219 LNVKDALSYLEQVKFQFSSRPDIYNLFLDIMKDFKSQAIDTPGVIERVSTLFRGYPILIQGFNTFLPQGYRI 290          
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3B_MOUSE (Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  464 DALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLP 676
            DAL YL  VK  F      Y+ FLE+MK+FK+  IDT GVI RV +LF  H DLI+GFN FLP GY I +P
Sbjct:   36 DALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIP 106          
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: SIN3B_HUMAN (Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  464 DALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLP 676
            DAL YL  VK  F      Y+ FLE+MK+FK+  IDT GVI RV +LF  H DLI+GFN FLP GY I +P
Sbjct:   43 DALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIP 113          
BLAST of FC923920 vs. ExPASy Swiss-Prot
Match: PST1_SCHPO (Paired amphipathic helix protein pst1 OS=Schizosaccharomyces pombe GN=pst1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  446 QKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAXRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITL 673
            ++L   DAL+YL  VK  F  + E Y++FL++MK+FK+  I+T  VI RV +LF G+ +LI GFNTFLP GY I +
Sbjct:  178 RQLNVTDALSYLDLVKLQFHQEPEIYNEFLDIMKEFKSQAIETPEVITRVSKLFAGYPNLIQGFNTFLPPGYSIEI 253          
The following BLAST results are available for this feature:
BLAST of FC923920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SIN3_ARATH4.057e-3184.42Paired amphipathic helix protein Sin3 OS=Arabidops... [more]
WRK19_ARATH2.467e-2066.22Probable WRKY transcription factor 19 OS=Arabidops... [more]
SIN3A_MOUSE1.354e-1859.46Paired amphipathic helix protein Sin3a OS=Mus musc... [more]
SIN3A_HUMAN1.354e-1859.46Paired amphipathic helix protein Sin3a OS=Homo sap... [more]
PST3_SCHPO6.718e-1857.89Paired amphipathic helix protein pst3 OS=Schizosac... [more]
SIN3_YEAST9.079e-1555.56Transcriptional regulatory protein SIN3 OS=Sacchar... [more]
SIN3B_MOUSE1.186e-1456.34Paired amphipathic helix protein Sin3b OS=Mus musc... [more]
SIN3B_HUMAN1.186e-1456.34Paired amphipathic helix protein Sin3b OS=Homo sap... [more]
PST1_SCHPO4.506e-1450.00Paired amphipathic helix protein pst1 OS=Schizosac... [more]
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Properties
Property NameValue
Genbank descriptionC31710D11EF StrClemenN Citrus clementina cDNA clone C31710D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923920 ID=FC923920; Name=FC923920; organism=Citrus clementina; type=EST; length=679bp
ATTCTAAACTCTCTCGCTTCTCTTCTCTTTTACATTGTGTTGTGTATCCT
CTGTTTTAATTATCATATTCCCTCTGTCAAACCATTGTTAAAAATTCACA
AAATCCTCAAAAAAATTTCAAGGGAAAAATAAAAAACGAAAGCCTTTGTT
TTCCTGTAATTAACTCTCGAAACGAGAAGCGTCTTTGTGAAGACTTTTTC
TCATTTTTGCGTTGTTGCTAATTTGCCGACGAAACGATCTTCTTATCTTC
ATTGATTTTCCTGTTTAATTGAAGTTGAAAGCATGATTTGAGAAAGATAG
AGAGTTTTTGTTTTGGTTTTACGAGATGAAGAGGTCCAGAGACGAGGTTT
ACATGAACTCTCAAATTAAACGGCCGATGATTTCTTCACGAGGAGAACCC
TCTGGGCAGACCCAAGTGGTGGGAGGAGGAGGAGGAGGAGGTGCACAGAA
GTTAACAACAAATGATGCCCTAGCATATCTCAAGGCTGTTAAGGACATAT
TTCAAGACAAAAGGGAGAAATACGATGACTTTCTTGAAGTTATGAAAGAC
TTCAAAGCTCANAGAATTGACACAGCAGGTGTCATAGCGAGGGTAAAGGA
GCTGTTTAAAGGGCATAGAGACCTAATTTTGGGTTTCAATACCTTCCTGC
CAAAGGGATATGAGATCACACTTCCACTT
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