FC923921

Overview
NameFC923921
Unique NameFC923921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 4.102e-108
Identity = 189/201 (94.03%), Postives = 193/201 (96.02%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LLG 675
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS HAQEALRRAKFKFPGRQKIIVSR WGFTKFSR+DYL++KSE RIVPDGVNA LLG
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLG 201
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 9.138e-108
Identity = 185/202 (91.58%), Postives = 195/202 (96.53%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LLGC 678
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD NS HAQEALRRAKFKFP RQKIIVSR WGFTKF+R+DY+++KS+ RI+PDGVNA LLGC
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGC 202
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 1.559e-107
Identity = 188/202 (93.07%), Postives = 193/202 (95.54%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LLGC 678
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD+NS +AQEALRRAKFKFPGRQKIIVSR WGFTK +R+DY R KSE RI+PDGVNA LLGC
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGC 202
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.365e-103
Identity = 181/202 (89.60%), Postives = 189/202 (93.56%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LLGC 678
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N++HA EALRRAKFKFPGRQKII SR WGFTKFSR +Y+R KSE RI+PDGVNA LLGC
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGC 202
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 375.555 bits (963), Expect = 1.365e-103
Identity = 181/202 (89.60%), Postives = 189/202 (93.56%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LLGC 678
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N++HA EALRRAKFKFPGRQKII SR WGFTKFSR +Y+R KSE RI+PDGVNA LLGC
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGC 202
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 373.244 bits (957), Expect = 6.777e-103
Identity = 178/202 (88.12%), Postives = 188/202 (93.07%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LLGC 678
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSR WGFTKF+R+DY + + EKRIVPDGVNA  L C
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSC 202
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.156e-102
Identity = 179/201 (89.05%), Postives = 190/201 (94.53%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LLG 675
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SR WGFTKF+R +Y++ K+E RI+ DGVNA LLG
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLG 201
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 372.474 bits (955), Expect = 1.156e-102
Identity = 179/201 (89.05%), Postives = 190/201 (94.53%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LLG 675
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SR WGFTKF+R +Y++ K+E RI+ DGVNA LLG
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLG 201
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.156e-102
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LLGC 678
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSR WGFTKF+R+D+ + + EKR+VPDGVNA  L C
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSC 202
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 1.510e-102
Identity = 179/200 (89.50%), Postives = 188/200 (94.00%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LL 672
            MGRRPARCYRQIKNKP PKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWE+ENVSSEALEAARI CNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+N+ HA EALRRAKFKFP RQKII SR WGFTKFSR+DYL++KSE RIVPDGVNA LL
Sbjct:    1 MGRRPARCYRQIKNKPCPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWERENVSSEALEAARIVCNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVNAKLL 200
The following BLAST results are available for this feature:
BLAST of FC923921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_SOLME4.102e-10894.0360S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_VITRI9.138e-10891.5860S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_EUPES1.559e-10793.0760S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL102_ORYSJ1.365e-10389.6060S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI1.365e-10389.6060S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ARATH6.777e-10388.1260S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ORYSJ1.156e-10289.0560S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI1.156e-10289.0560S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ARATH1.156e-10287.6260S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL10_MAIZE1.510e-10289.5060S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31710D12EF StrClemenN Citrus clementina cDNA clone C31710D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923921 ID=FC923921; Name=FC923921; organism=Citrus clementina; type=EST; length=680bp
AGCCATTTCTTTTTCTCTCCACTTTTCTTGGGTTTCTGGTTTAGTTGCTG
AATACCTACCAGGGCTTTCGCCATGGGAAGAAGACCTGCTAGGTGTTATC
GCCAGATAAAAAATAAGCCGTATCCGAAATCACGCTTTTGTCGTGGTGTG
CCTGATCCCAAGATCAGGATCTATGATGTTGGAATGAAGAAGAAAGGGGT
TGATGAATTCCCTTTCTGTGTGCACTTGGTGTCTTGGGAAAAGGAGAACG
TATCTAGTGAAGCTCTTGAGGCTGCTCGAATTGCTTGCAACAAATATATG
GCCAAGTTTGCCGGGAAAGATGCTTTCCATTTGCGAGTCCGTGTTCACCC
ATTCCATGTCTTGCGTATCAACAAAATGCTTTCATGTGCTGGAGCTGATA
GGCTTCAAACTGGTATGAGGGGTGCTTTCGGTAAACCACAGGGCACTTGT
GCTAGAGTTGCCATTGGACAGGTCCTCCTGTCAGTTCGCTGCAAGGATAG
CAATAGTCTTCATGCTCAAGAGGCTCTTCGTCGTGCAAAGTTCAAGTTTC
CTGGTCGCCAAAAAATCATTGTCAGCAGATAGTGGGGTTTCACCAAGTTT
AGCCGCAGTGATTATTTGAGGTTCAAGTCAGAGAAACGTATTGTGCCCGA
TGGTGTTAATGCATAGCTTCTTGGATGTCA
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